Jatropha Genome Database

JcCA0142191.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0142191.20 - phase: 0 /pseudo/partial
         (327 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517382|gb|FM887324.1|FM887324 FM887324 Jatropha curcas emb...    60   2e-09
gi|268523915|gb|FM890601.1|FM890601 FM890601 Jatropha curcas emb...    60   2e-09
gi|268519083|gb|FM887550.1|FM887550 FM887550 Jatropha curcas emb...    52   4e-07

>gi|268517382|gb|FM887324.1|FM887324 FM887324 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000502,
           mRNA sequence
          Length = 565

 Score = 60.0 bits (30), Expect = 2e-09
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                       
Query: 78  tccattttaaggttgatttgttgaagaacaagtttggattcgacgaggctttcaattaca 137
           |||||| ||||||  |||| || ||||  |||||||||||| | || ||||||||||| |
Sbjct: 271 tccattataaggtccatttattaaagactaagtttggattccatgatgctttcaattata 212

                                         
Query: 138 atgaagaacaggacttggatgcagctttga 167
           |||||||| | |||||  ||||||||||||
Sbjct: 211 atgaagaaaaagacttcaatgcagctttga 182


>gi|268523915|gb|FM890601.1|FM890601 FM890601 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000495,
           mRNA sequence
          Length = 495

 Score = 60.0 bits (30), Expect = 2e-09
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 99  tgaagaacaagtttggattcgacgaggctttcaattacaatgaaga 144
           |||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct: 6   tgaagaacaagtttgggttcgatgatgctttcaattacaaggaaga 51


>gi|268519083|gb|FM887550.1|FM887550 FM887550 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000774,
           mRNA sequence
          Length = 578

 Score = 52.0 bits (26), Expect = 4e-07
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 98  ttgaagaacaagtttggattcgacgaggctttcaattacaatgaagaacaggacttggat 157
           |||| |||||||||||| ||||| |  ||||||||||| || || || || |||| ||||
Sbjct: 346 ttgacgaacaagtttggtttcgatgctgctttcaattataaagaggagcaagactgggat 287

                         
Query: 158 gcagctttgaaaag 171
           ||||| ||||||||
Sbjct: 286 gcagcattgaaaag 273