Jatropha Genome Database

JcCA0142191.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0142191.10 + phase: 0 
         (1098 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517382|gb|FM887324.1|FM887324 FM887324 Jatropha curcas emb...   167   3e-41
gi|268523915|gb|FM890601.1|FM890601 FM890601 Jatropha curcas emb...    72   1e-12

>gi|268517382|gb|FM887324.1|FM887324 FM887324 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000502,
           mRNA sequence
          Length = 565

 Score =  167 bits (84), Expect = 3e-41
 Identities = 141/160 (88%)
 Strand = Plus / Minus

                                                                       
Query: 430 ggtatgcctgggataactgcttatgctggattttacgaggttggtgctcctaagaaagga 489
           |||||||||||  |||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct: 544 ggtatgcctggcctaactgcttatgctggtttttatgagattggtgctcctaagaaagga 485

                                                                       
Query: 490 gattatgtgtttgtttcagcagcttctggcggaataggtcaaattgttgggcaatttgca 549
           || |||||||||||||||||||||||||| | | | |||| | ||||||| || ||||| 
Sbjct: 484 gagtatgtgtttgtttcagcagcttctggtgcagtcggtctacttgttggtcagtttgcc 425

                                                   
Query: 550 aagttggctggttgctatgttgttgggagtgctggaagta 589
           ||| || ||||||||||||| ||||| |||||||||||||
Sbjct: 424 aagctgactggttgctatgtggttggaagtgctggaagta 385



 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 610 aagaataaatttggattcgatgaggctttcaattataacgaagaaaaggatttggatgca 669
           |||| ||| ||||||||| |||| |||||||||||||| |||||||| || ||  |||||
Sbjct: 248 aagactaagtttggattccatgatgctttcaattataatgaagaaaaagacttcaatgca 189

                         
Query: 670 gctttgaaaaggta 683
           ||||||| ||||||
Sbjct: 188 gctttgagaaggta 175


>gi|268523915|gb|FM890601.1|FM890601 FM890601 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000495,
           mRNA sequence
          Length = 495

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 124/152 (81%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                       
Query: 608 tgaagaataaatttggattcgatgaggctttcaattataacgaagaaaaggatttggatg 667
           ||||||| || ||||| |||||||| ||||||||||| || |||||    ||||| ||||
Sbjct: 6   tgaagaacaagtttgggttcgatgatgctttcaattacaaggaagagccagatttagatg 65

                                                                       
Query: 668 cagctttgaaaaggtattttcct-gaaggcatcgacctatattttgatattgttggtgga 726
           ||||| | ||||||||||||||| |||||||| ||  | || || || | ||||||||| 
Sbjct: 66  cagctcttaaaaggtattttcctagaaggcatagatatttacttcgaaaatgttggtggg 125

                                           
Query: 727 aaaatgctcgacgcagttctacttaacatgag 758
           |||||||| || ||||| || || ||||||||
Sbjct: 126 aaaatgcttgatgcagtgctcctcaacatgag 157