Jatropha Genome Database

JcCA0141621.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0141621.10 + phase: 0 
         (1509 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed seque...   297   2e-80
gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas emb...   113   6e-25

>gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed sequence
            tags from Jatropha curcas root cDNA library Jatropha
            curcas cDNA, mRNA sequence
          Length = 619

 Score =  297 bits (150), Expect = 2e-80
 Identities = 417/506 (82%)
 Strand = Plus / Plus

                                                                        
Query: 655  tttccttccttaaaatggcttccttcagtcaagagggaaaaatctagagttatgaaattg 714
            ||||||||| || ||||||||||| | | ||||||||||| ||| ||| ||  |||||||
Sbjct: 104  tttccttccctacaatggcttcctactgccaagagggaaagatcaagaatttggaaattg 163

                                                                        
Query: 715  cattatgaaacagataagatcctggaagatatcttacaagagcataaagcaaacaagcag 774
            ||  |  | |||||| |||| || |||||||||||||||||||||| ||| || |  |||
Sbjct: 164  caccaaaatacagatgagattctcgaagatatcttacaagagcatagagctaaaagacag 223

                                                                        
Query: 775  gcgtgggtttccgaggatggcgatgggaggaaagctggcaatttcgttgatgttcttctg 834
            |||   | |||| || || | ||| ||||  ||||||  ||| |  ||||||||||| ||
Sbjct: 224  gcgacagcttccaagaattgggataggagcgaagctgataatcttcttgatgttcttttg 283

                                                                        
Query: 835  gaccttcaacaaagtggaaatcttgattttcccttaactgatgtcaccattaaagcatca 894
            || |||||||| || |||||||||||| |||| |||||||||||| |||| |||||| ||
Sbjct: 284  gatcttcaacagagcggaaatcttgatgttcctttaactgatgtcgccatcaaagcagca 343

                                                                        
Query: 895  accatcgatgcttttgtgggtggaagtgacacatcctcaaaaactacagaatgggcaatg 954
            |  || |||   ||||  | |||||| |||||||||||||||||| ||||||||||||||
Sbjct: 344  attattgatatgtttggtgctggaagcgacacatcctcaaaaactgcagaatgggcaatg 403

                                                                        
Query: 955  gcagagttgatgaggaaaccggaaataatgaaaaaagcgcaagaagaattgcggagtgtc 1014
            || |||||||||||||| || ||| ||||||| ||||| |||||||||||||||| | ||
Sbjct: 404  gctgagttgatgaggaatccagaagtaatgaagaaagcacaagaagaattgcggaatttc 463

                                                                        
Query: 1015 tttggtgaaaaagggtacattgaggaagcaaaactccaggaattaaaatggttgaagtta 1074
            ||||||||||| ||  |   ||||||||||||||| || |||||||||||| | ||||||
Sbjct: 464  tttggtgaaaatggaaaggatgaggaagcaaaacttcacgaattaaaatggataaagtta 523

                                                                        
Query: 1075 attattaaagaaacaatgagattacatcctgtactttcactacttccaagggtttgtaag 1134
            ||||||||||||||| ||||||||||||||| | |  |  || ||||||||||||||| |
Sbjct: 524  attattaaagaaacattgagattacatcctgcagtggctgtaattccaagggtttgtagg 583

                                      
Query: 1135 caaaagactaaagttagtggatatga 1160
             ||||||||||||||  |||||||||
Sbjct: 584  gaaaagactaaagtttatggatatga 609


>gi|268519759|gb|FM888226.1|FM888226 FM888226 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001583,
            mRNA sequence
          Length = 258

 Score =  113 bits (57), Expect = 6e-25
 Identities = 93/105 (88%)
 Strand = Plus / Minus

                                                                        
Query: 1394 actggaaatttcctaaaggaattactgcagagaatcttgacatgaccgatgcttttggag 1453
            |||||||||||||||||||| | |||||||| |||||||||||||  || ||||||||||
Sbjct: 219  actggaaatttcctaaaggagtaactgcagaaaatcttgacatgaatgaagcttttggag 160

                                                         
Query: 1454 gagttatgaagagaaaagtagaccttgaactgattcccattccat 1498
            ||| | | || |||||||||||||||||| |||| ||||||||||
Sbjct: 159  gagctgtcaaaagaaaagtagaccttgaattgatccccattccat 115