Jatropha Genome Database
- JcCA0141381.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0141381.10 + phase: 1 /partial
(662 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268519836|gb|FM888303.1|FM888303 FM888303 Jatropha curcas emb... 934 0.0
gi|262090957|gb|GT229315.1|GT229315 JC880 Jatropha seeds from fr... 212 4e-55
gi|237680307|gb|GO246519.1|GO246519 JcrME_RL0063 Expressed seque... 204 9e-53
gi|262090877|gb|GT229235.1|GT229235 JC800 Jatropha seeds from fr... 56 5e-08
>gi|268519836|gb|FM888303.1|FM888303 FM888303 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001689,
mRNA sequence
Length = 613
Score = 934 bits (471), Expect = 0.0
Identities = 560/590 (94%)
Strand = Plus / Plus
Query: 1 aacaaagaatgagtagaggaagtggaggtggttacgatcgccatatcacaatcttctccc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 24 aacaaagaatgagtagaggaagtggaggtggttacgatcgtcatatcacaatcttctccc 83
Query: 61 ctgaaggtcgtcttttccaagtcgaatatgcgtttaaggctgtaaaggcagctgccatca 120
| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 84 ccgaaggtcgcctcttccaagtcgaatatgcgtttaaggcggtaaaggcagctgccatta 143
Query: 121 cttcgatcggagttcgcggaaaggactctgtctgtgttgtcacgcagaagaaagttccag 180
|||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 144 cttcgatcggagttcgtggaaaggactctgtctgtgttgtcacacagaagaaggttccgg 203
Query: 181 acaagcttttggatcagactagtgttacccacctttttcctattaccaagtaccttggat 240
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 204 acaagcttttggatcagactagtgtcactaacctttttcctattaccaagtaccttggat 263
Query: 241 tattggctactggcatgaccgctgatgcaagaactttggtccagcaagcacggaatgagg 300
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgttggctactgggatgacagctgatgcaagaactttggtccagcaagcacggaatgagg 323
Query: 301 cagctgagtttcgtttcagatatggatatgaaatgcctgtagatgtattggccaaatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagctgagtttcgtttcagatatggatatgaaatgcctgtagatgtattggccaaatgga 383
Query: 361 tagcagataaatcacaggtttacactcagcatgcttacatgagaccccttggagtagttg 420
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgcagacaaatcgcaggtttacactcagcatgcttacatgagaccccttggagtagttg 443
Query: 421 ctatggtcttgggcattgatgaggagaatgggcctcagctctacaagtgtgatccagctg 480
|||||||||| || |||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct: 444 ctatggtcttaggtattgatgaagagaatgggcctcaactctancagtgtgatccagctg 503
Query: 481 gccacttctacggtcacaaggccacaagtgctggattgaaagaacaagaggctattaatt 540
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 504 gccacttctttggtcacaaggccacaagtgctggattgaaagaccaagaggctatcaatt 563
Query: 541 ttttggaaaagaaaatgaaaaatgaccctgctttctcctatgaggaaact 590
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcttggaaaagaaaatgaaaaatgaccctgctttctcctatgaggaaact 613
>gi|262090957|gb|GT229315.1|GT229315 JC880 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL21SE.H03.scf 5', mRNA sequence
Length = 153
Score = 212 bits (107), Expect = 4e-55
Identities = 134/143 (93%)
Strand = Plus / Minus
Query: 36 gatcgccatatcacaatcttctcccctgaaggtcgtcttttccaagtcgaatatgcgttt 95
||||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct: 153 gatcgtcatatcacaatcttctcccccgaaggtcgcctcttccaagtcgaatatgcgttt 94
Query: 96 aaggctgtaaaggcagctgccatcacttcgatcggagttcgcggaaaggactctgtctgt 155
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 93 aaggcggtaaaggcagctgccattacttcgatcggagttcgtggaaaggactctgtctgt 34
Query: 156 gttgtcacgcagaagaaagttcc 178
|||||||| |||||||| |||||
Sbjct: 33 gttgtcacacagaagaaggttcc 11
>gi|237680307|gb|GO246519.1|GO246519 JcrME_RL0063 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 486
Score = 204 bits (103), Expect = 9e-53
Identities = 151/163 (92%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 497 caaggccacaa-gtgctggattgaaagaacaagaggctattaattttttggaaaagaaaa 555
||||||||||| |||||| || |||||||||| ||||||| ||||| | |||||||||||
Sbjct: 423 caaggccacaaagtgctgaat-gaaagaacaaaaggctatcaatttct-ggaaaagaaaa 366
Query: 556 tgaaaaatgaccctgctttctcctatgaggaaactgtgcagactgccatttcggctctac 615
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 365 tgaaaaatgaccctgctttctcctatgaggaaactgtgcagactgccatttctgctttgc 306
Query: 616 aatctattctgcaagaggacttcaaggctactgagattgaggt 658
|||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 305 aatctaatctgccagaggacttcaaggctactgagattgaggt 263
>gi|262090877|gb|GT229235.1|GT229235 JC800 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL19SE.A06.scf 5', mRNA sequence
Length = 171
Score = 56.0 bits (28), Expect = 5e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 48 acaatcttctcccctgaaggtcgtcttttccaagtcgaatatgc 91
|||||||||||||||||||||||||| | |||||| || |||||
Sbjct: 73 acaatcttctcccctgaaggtcgtctataccaagtggagtatgc 116