Jatropha Genome Database

JcCA0140751.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0140751.10 + phase: 0 
         (714 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523077|gb|FM896520.1|FM896520 FM896520 Jatropha curcas emb...    90   4e-18

>gi|268523077|gb|FM896520.1|FM896520 FM896520 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003752,
           mRNA sequence
          Length = 469

 Score = 89.7 bits (45), Expect = 4e-18
 Identities = 318/409 (77%)
 Strand = Plus / Plus

                                                                       
Query: 279 ttggacatttctcgaataccttttgcaccgcttccttttccacttcaaaactaagactta 338
           ||||||||| || ||||||  |||||| |||||  |||||||| ||||||| ||||||||
Sbjct: 53  ttggacattgctggaatacagtttgcatcgctttgttttccacatcaaaacgaagactta 112

                                                                       
Query: 339 ctggggaaacaccatacactatcttcttcatgggttgcatcataagtttccgatggatcg 398
            ||| | |||||| ||||||| ||| |||| || |  ||||| |||   || |||||| |
Sbjct: 113 ttggtggaacaccttacactaccttattcacggctgtcatcacaagcaccctatggatgg 172

                                                                       
Query: 399 ttttcggcttgtcatgcctcctttagcaaccgctcttttctctctgctgttctggcactt 458
           ||| ||||||||| | |||||    ||||| ||| || | | | |||  |||||| ||||
Sbjct: 173 tttgcggcttgtctttcctccagctgcaacagctgttctttgtgtgccattctggaactt 232

                                                                       
Query: 459 gtttcattttgtgggcaccccctcaactgctcctgctgtatttggaggtactttgctggg 518
           | ||||  || | |  || |||||||||||||||||  |||||||||||  ||||  |||
Sbjct: 233 ggttcaacttttcgctactccctcaactgctcctgcgttatttggaggtggtttgaaggg 292

                                                                       
Query: 519 ttatgtgatctatgacttgactcactactatttacatcatggtcaaccctcaactttact 578
           ||||||||| || ||||  ||||| || || || ||||||||||| || |||| |  | |
Sbjct: 293 ttatgtgatgtacgactgtactcattattacttgcatcatggtcagccatcaagtggagt 352

                                                                       
Query: 579 gtctaaaagtctcaagaaataccatttaagtcatcacttcaaggtccaagatgttgggtt 638
             | ||   ||||||||||||||| || | |||||||||||   ||||| || | || ||
Sbjct: 353 accaaaggatctcaagaaataccacttgaatcatcacttcagaatccaaaatatgggttt 412

                                                            
Query: 639 tggaattacttcaactctgtgggacattgtatttggaacacttcctcca 687
           |||||| |||||| | ||||||||||  || ||||||||||||||||||
Sbjct: 413 tggaatcacttcagccctgtgggacagggtgtttggaacacttcctcca 461