Jatropha Genome Database
- JcCA0139851.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0139851.20 + phase: 2 /TE/partial
(2668 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas emb... 557 e-158
gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas emb... 228 3e-59
gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas emb... 62 3e-09
>gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587,
mRNA sequence
Length = 563
Score = 557 bits (281), Expect = e-158
Identities = 410/449 (91%), Gaps = 3/449 (0%)
Strand = Plus / Plus
Query: 1286 caatttctaaacttggttgagagacagacaggcaaaaagctgaggtgcatcaaaacagat 1345
||||||||||||||||||||| |||| || ||||| ||||||| |||||||| |||||||
Sbjct: 116 caatttctaaacttggttgagcgacaaacgggcaagaagctgaagtgcatcagaacagat 175
Query: 1346 aatggtggagaatacacagggccatttgatgctttctgcaaatagcatggtattcgacat 1405
||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 176 aatggtggagaatacactgggccatttgatactttctgcaaagagcatggtattcgacat 235
Query: 1406 caaacaacacctcccaagacgccgcaattgaatggtttggctgagaggatgaacagaact 1465
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 236 caaacaacacctcccaagacgccgcaactgaatggtttggctgagaggatgaatagaact 295
Query: 1466 ttgatggagagagtcagatgtttactctcacatgcaaagttgtttaaaagatttt-gggg 1524
| | ||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||
Sbjct: 296 taaacggagagagtcagatgtttattctcacatgtaaagttgtctaaaagattttggggg 355
Query: 1525 tgaagctcttcttacagcagttcatcttataaatcgttcaccttgtgttcctctaatagt 1584
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 356 tgaagctcttcttacagcagttcatcttataaatcgttcaccttgtgttcctct-tcagt 414
Query: 1585 atgatactccagaaagagtttggttaggaaatgatgtttcctatgatcatttgcgggtgt 1644
|||||| |||| ||||||| |||| |||||| |||||||||||||| | |||| |||||
Sbjct: 415 atgataatccacaaagagtatggtcaggaaagaatgtttcctatgattacttgcaggtgt 474
Query: 1645 ttggctgcaaa-gccttcgtgcatattcctaaggataagaggtctaagcttgatgtcaag 1703
||| |||||| || || |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 475 atggttgcaaaggcatttgtgcatattcctaaggatgagaggtctaagcttgatgtcaaa 534
Query: 1704 actcaataatgtgtattcattggctatgg 1732
|||| | ||||||||||||||||||||||
Sbjct: 535 actcgacaatgtgtattcattggctatgg 563
>gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537,
mRNA sequence
Length = 557
Score = 228 bits (115), Expect = 3e-59
Identities = 265/314 (84%), Gaps = 12/314 (3%)
Strand = Plus / Plus
Query: 1441 tttggctgagaggatgaacagaactttgatggagagagtcagatgtttactctcacatgc 1500
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 169 tttggctgagaggatgaacagaactttgatggagagagtcagatgtgtactctcacatgc 228
Query: 1501 aaagttgtttaaaagattttggggtgaagctcttcttacagcagttcatcttataaatcg 1560
|||||||| ||| |||||||||||| ||||| | ||||||| |||| ||||
Sbjct: 229 aaagttgtctaagagattttggggtaaagctttacttacagtagtt---------tatcg 279
Query: 1561 ttcaccttgtgttcctctaatagtatgatactcc--agaaagagtttggttaggaaatga 1618
|||||| ||| | ||||| | ||||||||||||| ||| ||||| ||||||||||||||
Sbjct: 280 ttcaccctgtttccctct-acagtatgatactccagagagagagtatggttaggaaatga 338
Query: 1619 tgtttcctatgatcatttgcgggtgtttggctgcaaagccttcgtgcatattcctaagga 1678
||| ||||||||||||||||||||||||| || ||||||||||| ||| | | |||||
Sbjct: 339 tgtatcctatgatcatttgcgggtgtttgattgtaaagccttcgtacatgtcctgaagga 398
Query: 1679 taagaggtctaagcttgatgtcaagactcaataatgtgtattcattggctatggccaaga 1738
| | |||| ||||||||||| ||||| | | |||||||||||||| ||||||| |||
Sbjct: 399 tgaacggtcgaagcttgatgttcagactagacagtgtgtattcattggttatggcccaga 458
Query: 1739 taaatttggctata 1752
||||||||||||
Sbjct: 459 ccaatttggctata 472
>gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002630,
mRNA sequence
Length = 509
Score = 61.9 bits (31), Expect = 3e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 784 aatctcggttggcagactt-gatgctgaaaatttctgtagcgccttcagaaatggtcagt 842
||||||| ||||||||||| |||| |||| |||||||||| ||||| | |||||||||
Sbjct: 366 aatctcgtttggcagactttgatgatgaaggtttctgtagcaccttctaacatggtcagt 307
Query: 843 ggaaactcacaaaaggttc 861
|||| ||||| ||||||||
Sbjct: 306 ggaagctcaccaaaggttc 288