Jatropha Genome Database

JcCA0139011.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0139011.10 - phase: 0 /pseudo/partial
         (732 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522650|gb|FM896691.1|FM896691 FM896691 Jatropha curcas emb...   474   e-134

>gi|268522650|gb|FM896691.1|FM896691 FM896691 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003968,
           mRNA sequence
          Length = 505

 Score =  474 bits (239), Expect = e-134
 Identities = 289/298 (96%), Gaps = 7/298 (2%)
 Strand = Plus / Minus

                                                                       
Query: 422 agcttgcagaaatgatgacggaggtctattcaaaggtaagcggagaa-gctgctctgg-a 479
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 505 agcttgcagaaatgatgacggaggtctattcaaaggtaagcggagaaagctgctctggga 446

                                                                       
Query: 480 tgtaccaacagttgatatctcc-tccaagggaatttttatggtgagggatatgatgatag 538
            ||||||||||||||||||||| ||||||| |  ||||||||||||||||||||||||||
Sbjct: 445 ggtaccaacagttgatatctccctccaaggaa--ttttatggtgagggatatgatgatag 388

                                                                       
Query: 539 tgacaaaagaattccagacatgaccataatcgatagacaactt-ggttggaaccctaaga 597
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 387 tgacaaaagaattccagacatgaccataatcgatagacaactttggttggaaccctaaga 328

                                                                       
Query: 598 catcactgtgggatttgcttgaatcaacccttacttatcaacacaggacatatgcagagg 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 catcactgtgggatttgcttgaatcaacccttacttatcaacacaggacatatgcagagg 268

                                                                     
Query: 658 caa-ttaagaaggttatggcaaaacctacatccagctaaggagaaggggaatccttgg 714
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caatttaagaaggttatggcaaaacctacatccagctaaggagaaggggaatccttgg 210