Jatropha Genome Database
- JcCA0138571.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0138571.10 + phase: 0 /pseudo/partial
(435 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680262|gb|GO247567.1|GO247567 JcrME_RL1111 Expressed seque... 377 e-105
gi|268517174|gb|FM893522.1|FM893522 FM893522 Jatropha curcas emb... 359 2e-99
gi|268521447|gb|FM894199.1|FM894199 FM894199 Jatropha curcas emb... 200 9e-52
gi|237680525|gb|GO246676.1|GO246676 JcrME_RL0220 Expressed seque... 76 4e-14
>gi|237680262|gb|GO247567.1|GO247567 JcrME_RL1111 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 513
Score = 377 bits (190), Expect = e-105
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 246 cgtggtagagttgcttctagggttagtgttctgtttttgggcagccttaactgtaccggg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cgtggtagagttgcttctagggttagtgttctgtttttgggcagccttaactgtaccggg 359
Query: 306 aaagttccgatccatacacccttattctgatgaaaataggatagtttctttacccgctaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaagttccgatccatacacccttattctgatgaaaataggatagtttctttacccgctaa 299
Query: 366 tatggacttcatggtctttaaccatcgtggcaaagtatttccttcggaaatggacatgaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tatggacttcatggtctttaaccatcgtggcaaagtatttccttcggaaatggacatgaa 239
Query: 426 gttgaagcat 435
||||||||||
Sbjct: 238 gttgaagcat 229
Score = 89.7 bits (45), Expect = 2e-18
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 73 tcctgaagattatggaggaggaattttcaggacctccaatgaatg 117
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tcctgaagattatggaggaggaattttcaggacctccaatgaatg 420
>gi|268517174|gb|FM893522.1|FM893522 FM893522 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004365,
mRNA sequence
Length = 516
Score = 359 bits (181), Expect = 2e-99
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 255 gttgcttctagggttagtgttctgtttttgggcagccttaactgtaccgggaaagttccg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gttgcttctagggttagtgttctgtttttgggcagccttaactgtaccgggaaagttccg 69
Query: 315 atccatacacccttattctgatgaaaataggatagtttctttacccgctaatatggactt 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 atccatacacccttattctgatgaaaataggatagtttctttacccgctaatatggactt 129
Query: 375 catggtctttaaccatcgtggcaaagtatttccttcggaaatggacatgaagttgaagca 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 catggtctttaaccatcgtggcaaagtatttccttcggaaatggacatgaagttgaagca 189
Query: 435 t 435
|
Sbjct: 190 t 190
>gi|268521447|gb|FM894199.1|FM894199 FM894199 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004394,
mRNA sequence
Length = 666
Score = 200 bits (101), Expect = 9e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 244 gtcgtggtagagttgcttctagggttagtgttctgtttttgggcagccttaactgtaccg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gtcgtggtagagttgcttctagggttagtgttctgtttttgggcagccttaactgtaccg 283
Query: 304 ggaaagttccgatccatacacccttattctgatgaaaatag 344
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggaaagttccgatccatacacccttattctgatgaaaatag 324
Score = 184 bits (93), Expect = 6e-47
Identities = 118/128 (92%), Gaps = 10/128 (7%)
Strand = Plus / Plus
Query: 1 atgggctttggctttgcgattggcacttttggagttctgattctgggtcatgctacttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 atgggctttggctttgcgattggcacttttggagttctgattctgggtcatgctacttat 157
Query: 61 tcaaccattcaa----------tcctgaagattatggaggaggaattttcaggacctcca 110
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tcaaccattcaatatagaggtctcctgaagattatggaggaggaattttcaggacctcca 217
Query: 111 atgaatgt 118
||||||||
Sbjct: 218 atgaatgt 225
>gi|237680525|gb|GO246676.1|GO246676 JcrME_RL0220 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 300
Score = 75.8 bits (38), Expect = 4e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 345 gatagtttctttacccgctaatatggacttcatggtctttaaccatcgtggcaaagtatt 404
||||||||||||||||||||| | | |||| ||||||||||||||| |||||||||||
Sbjct: 284 gatagtttctttacccgctaaaaagactttca-ggtctttaaccatcggggcaaagtatt 226
Query: 405 tccttcggaaatgg 418
||| ||||||||||
Sbjct: 225 tccctcggaaatgg 212