Jatropha Genome Database
- JcCA0136741.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0136741.10 - phase: 0 /partial
(1497 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268521718|gb|FM894314.1|FM894314 FM894314 Jatropha curcas emb... 178 1e-44
gi|268523140|gb|FM894723.1|FM894723 FM894723 Jatropha curcas emb... 161 3e-39
gi|268523129|gb|FM894712.1|FM894712 FM894712 Jatropha curcas emb... 98 4e-20
gi|262091167|gb|GT228594.1|GT228594 JC159 Jatropha seeds from fr... 92 2e-18
>gi|268521718|gb|FM894314.1|FM894314 FM894314 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004634,
mRNA sequence
Length = 551
Score = 178 bits (90), Expect = 1e-44
Identities = 359/446 (80%), Gaps = 2/446 (0%)
Strand = Plus / Plus
Query: 916 tttgatgtgtggccttatctggagaactttgctgaggatgtggcaagtgaaattgtagcc 975
|||||||||||||| | |||||| |||||| || |||| ||| |||||||| |||
Sbjct: 2 tttgatgtgtggccattcttggagacctttgcagatgatgcatcaaatgaaattgctgcc 61
Query: 976 gagttacaggccgttcctgattttataatagggaactacagtgatgggaatcttgttgca 1035
|| ||||| | ||||| ||| |||| || || || || |||||||| |||||||||||
Sbjct: 62 gaattacaaggagttccagatcttattattggaaattatagtgatggaaatcttgttgct 121
Query: 1036 tctttattggcctataaaatgggtgttacacagtgtaccatcgcgcatgccttggagaaa 1095
||||| ||| | ||||| | || |||| ||||| | ||| |||||||| |||||||||
Sbjct: 122 tctttgttgtcttataagctaggaattacgcagtgcaacattgcgcatgcattggagaaa 181
Query: 1096 acaaaatatccagattcagatatatattggaaaaaatttgatgataaatatcacttctct 1155
| ||| ||||| ||||| |||||||| |||| ||||| ||| || || || || || |
Sbjct: 182 ataaagtatccggattctgatatatactggagaaaatatgacgacaagtaccattttgca 241
Query: 1156 tgtcaattcactgctga-catattagccatgaacaatgcagattttataatcactagtac 1214
|||| || || ||||| | |||| || |||||||||||||||||||| |||||||||||
Sbjct: 242 agtcagtttacagctgatcttatt-gcaatgaacaatgcagattttattatcactagtac 300
Query: 1215 ttaccaagaaattgcaggaacgaagaatactgttggtcagtatgaaagtcacactgcttt 1274
||||| || |||||||||| |||| || |||||| |||||||| || || ||||||||
Sbjct: 301 gtaccaggagattgcaggaagcaagactaatgttggacagtatgagagccatactgcttt 360
Query: 1275 cactctccccggattatatcgagttgttcatggaattgatgtctttgatcccaagttcaa 1334
||||| || || | ||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct: 361 tactcttcctgggctgtatcgagttgttcatggtattgacgtttttgatcccaagtttaa 420
Query: 1335 tattgtctctcctggggcagatatgt 1360
||| |||||||| || ||||||||||
Sbjct: 421 tatagtctctccgggagcagatatgt 446
>gi|268523140|gb|FM894723.1|FM894723 FM894723 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000567,
mRNA sequence
Length = 605
Score = 161 bits (81), Expect = 3e-39
Identities = 195/233 (83%)
Strand = Plus / Plus
Query: 1183 atgaacaatgcagattttataatcactagtacttaccaagaaattgcaggaacgaagaat 1242
|||||||||||||||||||| ||||||||||| ||||| || |||||||||| |||| |
Sbjct: 62 atgaacaatgcagattttattatcactagtacgtaccaggagattgcaggaagcaagact 121
Query: 1243 actgttggtcagtatgaaagtcacactgctttcactctccccggattatatcgagttgtt 1302
| |||||| |||||||| || || |||||||| ||||| || || | ||||||||||||
Sbjct: 122 aatgttggacagtatgagagccatactgcttttactcttcctgggctgtatcgagttgtt 181
Query: 1303 catggaattgatgtctttgatcccaagttcaatattgtctctcctggggcagatatgtcc 1362
||||| ||||| || |||||||||||||| ||||| |||||||| || |||||||||| |
Sbjct: 182 catggtattgacgtttttgatcccaagtttaatatagtctctccgggagcagatatgtgc 241
Query: 1363 atctacttcccatattctgaaaagcaaaaaaggcttacagccctacatggttc 1415
|| || || ||||| || |||| | ||| ||| ||||| || ||||||||||
Sbjct: 242 atatattttccatactccgaaagggaaagaagacttactgctttacatggttc 294
>gi|268523129|gb|FM894712.1|FM894712 FM894712 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000549,
mRNA sequence
Length = 275
Score = 97.6 bits (49), Expect = 4e-20
Identities = 180/221 (81%), Gaps = 2/221 (0%)
Strand = Plus / Plus
Query: 1061 ttacacagtgtaccatcgcgcatgccttggagaaaacaaaatatccagattcagatatat 1120
|||| ||||| | ||| |||||||| |||||||||| ||| ||||| ||||| |||||||
Sbjct: 52 ttacgcagtgcaacattgcgcatgcattggagaaaataaagtatccggattctgatatat 111
Query: 1121 attggaaaaaatttgatgataaatatcacttctcttgtcaattcactgctga-catatta 1179
| |||| ||||| ||| || || || || || | |||| || || ||||| | ||||
Sbjct: 112 actggagaaaatatgacgacaagtaccattttgcaagtcagtttacagctgatcttatt- 170
Query: 1180 gccatgaacaatgcagattttataatcactagtacttaccaagaaattgcaggaacgaag 1239
|| |||||||||||||||||||| ||||||||||| ||||| || |||||||||| |||
Sbjct: 171 gcaatgaacaatgcagattttattatcactagtacgtaccaggagattgcaggaagcaag 230
Query: 1240 aatactgttggtcagtatgaaagtcacactgctttcactct 1280
| || |||||| |||||||| || || |||||||| |||||
Sbjct: 231 actaatgttggacagtatgagagccatactgcttttactct 271
>gi|262091167|gb|GT228594.1|GT228594 JC159 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
PL01SE.A01.scf 5', mRNA sequence
Length = 580
Score = 91.7 bits (46), Expect = 2e-18
Identities = 139/170 (81%)
Strand = Plus / Plus
Query: 1180 gccatgaacaatgcagattttataatcactagtacttaccaagaaattgcaggaacgaag 1239
|||||||| || ||||||| || ||||| ||||| | |||||||||||| |||| |||
Sbjct: 90 gccatgaatcatacagatttcatcatcaccagtacattccaagaaattgctggaagcaag 149
Query: 1240 aatactgttggtcagtatgaaagtcacactgctttcactctccccggattatatcgagtt 1299
| ||||||||||| ||||| || ||||| |||||||| || || || | || ||||
Sbjct: 150 gacactgttggtcaatatgagagccacacagctttcacccttcctgggctctacagagtc 209
Query: 1300 gttcatggaattgatgtctttgatcccaagttcaatattgtctctcctgg 1349
|||||||| |||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 210 gttcatggtattgatgtgtttgatcccaaattcaacattgtctcccctgg 259