Jatropha Genome Database
- JcCA0136721.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0136721.10 - phase: 0
(771 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268519734|gb|FM888201.1|FM888201 FM888201 Jatropha curcas emb... 1156 0.0
gi|237680852|gb|GO247003.1|GO247003 JcrME_RL0547 Expressed seque... 959 0.0
gi|268516826|gb|FM892378.1|FM892378 FM892378 Jatropha curcas emb... 682 0.0
gi|268525586|gb|FM890841.1|FM890841 FM890841 Jatropha curcas emb... 206 3e-53
>gi|268519734|gb|FM888201.1|FM888201 FM888201 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001553,
mRNA sequence
Length = 601
Score = 1156 bits (583), Expect = 0.0
Identities = 598/602 (99%), Gaps = 1/602 (0%)
Strand = Plus / Plus
Query: 85 gtcaagtttgcgtcttttgggaacttgaaggcagcaggtttgtcccagcggtcttttcgg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcaagtttgcgtcttttgggaacttgaaggcagcaggtttgtcccagcggtcttttcgg 60
Query: 145 ggtttggttgtcaaagctgctactgtggttgctcccaagtacacttcgattaagcctttg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtttggttgtcaaagctgctactgtggttgctcccaagtacacttcgattaagcctttg 120
Query: 205 ggtgatagagtgctggtgaagatcaaggttgcagaggagaagactgaaggtgggatttta 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtgatagagtgctggtgaagatcaaggttgcagaggagaagactgaaggtgggatttta 180
Query: 265 ctcccaacaactgcacagtcaaagcctcaaggaggagaagttgttgctgttggagaggga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcccaacaactgcacagtcaaagcctcaaggaggagaagttgttgctgttggagaggga 240
Query: 325 aagacaattgggaagaccaaactggacatctctgtcaagactggcgcccaggtcatctat 384
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagacaatagggaagaccaaactggacatctctgtcaagactggcgcccaggtcatctat 300
Query: 385 tccaagtatgctgggactgaggtggagttcaatggttcaccacaccttatcttgaaggag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccaagtatgctgggactgaggtggagttcaatggttcaccacaccttatcttgaaggag 360
Query: 445 gatgatattgttggtgtacttgagacagatgatatcaaggatctcaagccttgcaatgac 504
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 361 gatgatattgttggtgtacttga-acagatgatatcaaggatctcaagccttgcaatgac 419
Query: 505 cgagttttcataaaggttgctgaggctgaggagaaaacggctggaggcttgttgctgaca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cgagttttcataaaggttgctgaggctgaggagaaaacggctggaggcttgttgctgaca 479
Query: 565 gaggcaagcaaagagaaaccttcaattggcacagtaatagcagttgggcctggacctctt 624
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 480 gaggcaagcaaagagaaaccttcnattggcacagtaatagcagttgggcctgaacctctt 539
Query: 625 gatgaggaaggcaacaggaaacctctatcaatcaccccaggaaacacggttttgtactcc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gatgaggaaggcaacaggaaacctctatcaatcaccccaggaaacacggttttgtactcc 599
Query: 685 aa 686
||
Sbjct: 600 aa 601
>gi|237680852|gb|GO247003.1|GO247003 JcrME_RL0547 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 657
Score = 959 bits (484), Expect = 0.0
Identities = 506/511 (99%), Gaps = 3/511 (0%)
Strand = Plus / Minus
Query: 261 tttactcccaacaactgcacagtcaaagcctcaaggaggagaagttgttgctgttggaga 320
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 643 tttactcccaacaactgcacagtcaa-gcctcaaga--gagaagttgttgctgttggaga 587
Query: 321 gggaaagacaattgggaagaccaaactggacatctctgtcaagactggcgcccaggtcat 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gggaaagacaattgggaagaccaaactggacatctctgtcaagactggcgcccaggtcat 527
Query: 381 ctattccaagtatgctgggactgaggtggagttcaatggttcaccacaccttatcttgaa 440
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 526 ctattccaagtatgctgggactgaggtgaagttcaatggttcaccacaccttatcttgaa 467
Query: 441 ggaggatgatattgttggtgtacttgagacagatgatatcaaggatctcaagccttgcaa 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggaggatgatattgttggtgtacttgagacagatgatatcaaggatctcaagccttgcaa 407
Query: 501 tgaccgagttttcataaaggttgctgaggctgaggagaaaacggctggaggcttgttgct 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgaccgagttttcataaaggttgctgaggctgaggagaaaacggctggaggcttgttgct 347
Query: 561 gacagaggcaagcaaagagaaaccttcaattggcacagtaatagcagttgggcctggacc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gacagaggcaagcaaagagaaaccttcaattggcacagtaatagcagttgggcctggacc 287
Query: 621 tcttgatgaggaaggcaacaggaaacctctatcaatcaccccaggaaacacggttttgta 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcttgatgaggaaggcaacaggaaacctctatcaatcaccccaggaaacacggttttgta 227
Query: 681 ctccaagtacgcagggaatgacttcaagggaagtgatggtaccaactacattgcactgag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ctccaagtacgcagggaatgacttcaagggaagtgatggtaccaactacattgcactgag 167
Query: 741 agcttctgatgtgatggcagtgctctcttag 771
|||||||||||||||||||||||||||||||
Sbjct: 166 agcttctgatgtgatggcagtgctctcttag 136
>gi|268516826|gb|FM892378.1|FM892378 FM892378 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002918,
mRNA sequence
Length = 457
Score = 682 bits (344), Expect = 0.0
Identities = 344/344 (100%)
Strand = Plus / Minus
Query: 428 accttatcttgaaggaggatgatattgttggtgtacttgagacagatgatatcaaggatc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 accttatcttgaaggaggatgatattgttggtgtacttgagacagatgatatcaaggatc 398
Query: 488 tcaagccttgcaatgaccgagttttcataaaggttgctgaggctgaggagaaaacggctg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tcaagccttgcaatgaccgagttttcataaaggttgctgaggctgaggagaaaacggctg 338
Query: 548 gaggcttgttgctgacagaggcaagcaaagagaaaccttcaattggcacagtaatagcag 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaggcttgttgctgacagaggcaagcaaagagaaaccttcaattggcacagtaatagcag 278
Query: 608 ttgggcctggacctcttgatgaggaaggcaacaggaaacctctatcaatcaccccaggaa 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgggcctggacctcttgatgaggaaggcaacaggaaacctctatcaatcaccccaggaa 218
Query: 668 acacggttttgtactccaagtacgcagggaatgacttcaagggaagtgatggtaccaact 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 acacggttttgtactccaagtacgcagggaatgacttcaagggaagtgatggtaccaact 158
Query: 728 acattgcactgagagcttctgatgtgatggcagtgctctcttag 771
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 acattgcactgagagcttctgatgtgatggcagtgctctcttag 114
>gi|268525586|gb|FM890841.1|FM890841 FM890841 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000790,
mRNA sequence
Length = 579
Score = 206 bits (104), Expect = 3e-53
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 668 acacggttttgtactccaagtacgcagggaatgacttcaagggaagtgatggtaccaact 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 acacggttttgtactccaagtacgcagggaatgacttcaagggaagtgatggtaccaact 64
Query: 728 acattgcactgagagcttctgatgtgatggcagtgctctcttag 771
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 acattgcactgagagcttctgatgtgatggcagtgctctcttag 108