Jatropha Genome Database
- JcCA0134821.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0134821.20 + phase: 2 /partial
(787 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268519496|gb|FM887963.1|FM887963 FM887963 Jatropha curcas emb... 722 0.0
gi|237679838|gb|GO247143.1|GO247143 JcrME_RL0687 Expressed seque... 712 0.0
gi|238476710|gb|GR209248.1|GR209248 JCST27 Jatropha curcas L. se... 484 e-137
gi|262090840|gb|GT229198.1|GT229198 JC763 Jatropha seeds from fr... 153 4e-37
>gi|268519496|gb|FM887963.1|FM887963 FM887963 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001260,
mRNA sequence
Length = 557
Score = 722 bits (364), Expect = 0.0
Identities = 364/364 (100%)
Strand = Plus / Minus
Query: 424 cagggctgggcaaattgtcacatgggtcagtgatcctatgcatggaaacaccattaaggc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagggctgggcaaattgtcacatgggtcagtgatcctatgcatggaaacaccattaaggc 498
Query: 484 tccttgtggtctaaaaactcgaccatttgattccatcagggcggaggtgagagcattctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tccttgtggtctaaaaactcgaccatttgattccatcagggcggaggtgagagcattctt 438
Query: 544 tgatgtgcatgaccaagaaggaagccaccctggaggagttcatctagagatgactggcca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgatgtgcatgaccaagaaggaagccaccctggaggagttcatctagagatgactggcca 378
Query: 604 aaatgtgacagaatgcatcgggggatctcgaactgtgacatttgatgacttgagttcgcg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaatgtgacagaatgcatcgggggatctcgaactgtgacatttgatgacttgagttcgcg 318
Query: 664 ttaccacacccactgtgaccctagactcaatgcttcacaatctctagagcttgcattcat 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttaccacacccactgtgaccctagactcaatgcttcacaatctctagagcttgcattcat 258
Query: 724 cattgcagagcgccttagaaagagaaggatcaagtctcaaccctctattgctcccataag 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cattgcagagcgccttagaaagagaaggatcaagtctcaaccctctattgctcccataag 198
Query: 784 cctg 787
||||
Sbjct: 197 cctg 194
>gi|237679838|gb|GO247143.1|GO247143 JcrME_RL0687 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 572
Score = 712 bits (359), Expect = 0.0
Identities = 406/414 (98%), Gaps = 7/414 (1%)
Strand = Plus / Minus
Query: 374 ggagctgagaatatgagagtgaagcttccccatctaattagggcagttcgcagggctggg 433
|||||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct: 550 ggagctgaga-tatgagagtga-gcttccccatctaattaggtcagttcgcag--ctgg- 496
Query: 434 caaattgtcacatgggtcagtgatcctatgcatggaaacaccattaaggctccttgtggt 493
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 495 caaat-gtcacatgggtcagtgatcctatgcatg-aaacaccattaaggctccttgtggt 438
Query: 494 ctaaaaactcgaccatttgattccatcagggcggaggtgagagcattctttgatgtgcat 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctaaaaactcgaccatttgattccatcagggcggaggtgagagcattctttgatgtgcat 378
Query: 554 gaccaagaaggaagccaccctggaggagttcatctagagatgactggccaaaatgtgaca 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaccaagaaggaagccaccctggaggagttcatctagagatgactggccaaaatgtgaca 318
Query: 614 gaatgcatcgggggatctcgaactgtgacatttgatgacttgagttcgcgttaccacacc 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaatgcatcgggggatctcgaactgtgacatttgatgacttgagttcgcgttaccacacc 258
Query: 674 cactgtgaccctagactcaatgcttcacaatctctagagcttgcattcatcattgcagag 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cactgtgaccctagactcaatgcttcacaatctctagagcttgcattcatcattgcagag 198
Query: 734 cgccttagaaagagaaggatcaagtctcaaccctctattgctcccataagcctg 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cgccttagaaagagaaggatcaagtctcaaccctctattgctcccataagcctg 144
>gi|238476710|gb|GR209248.1|GR209248 JCST27 Jatropha curcas L. seed
cDNA library Jatropha curcas cDNA 3' similar to
Nicotiana tabacum 2-dehydro-3-deoxyphosphoheptonate
aldolase,putative/3-deoxy-D-arabino-heptulosonate
7-phosphate synthase, mRNA sequence
Length = 455
Score = 484 bits (244), Expect = e-137
Identities = 268/276 (97%)
Strand = Plus / Plus
Query: 512 gattccatcagggcggaggtgagagcattctttgatgtgcatgaccaagaaggaagccac 571
||||||| ||||| |||||| || ||||||| ||||||||||||| ||||||||||||
Sbjct: 1 gattccagcagggtggaggtctgaccattcttatatgtgcatgaccatgaaggaagccac 60
Query: 572 cctggaggagttcatctagagatgactggccaaaatgtgacagaatgcatcgggggatct 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctggaggagttcatctagagatgactggccaaaatgtgacagaatgcatcgggggatct 120
Query: 632 cgaactgtgacatttgatgacttgagttcgcgttaccacacccactgtgaccctagactc 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgaactgtgacatttgatgacttgagttcgcgttaccacacccactgtgaccctagactc 180
Query: 692 aatgcttcacaatctctagagcttgcattcatcattgcagagcgccttagaaagagaagg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatgcttcacaatctctagagcttgcattcatcattgcagagcgccttagaaagagaagg 240
Query: 752 atcaagtctcaaccctctattgctcccataagcctg 787
||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcaagtctcaaccctctattgctcccataagcctg 276
>gi|262090840|gb|GT229198.1|GT229198 JC763 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL18SE.H03.scf 5', mRNA sequence
Length = 505
Score = 153 bits (77), Expect = 4e-37
Identities = 176/209 (84%)
Strand = Plus / Plus
Query: 545 gatgtgcatgaccaagaaggaagccaccctggaggagttcatctagagatgactggccaa 604
||||| ||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct: 45 gatgtccatgagcaagaaggaagccaccctggaggaattcacctagaaatgactggccaa 104
Query: 605 aatgtgacagaatgcatcgggggatctcgaactgtgacatttgatgacttgagttcgcgt 664
|||||||| || ||||| || || ||| | || || || ||||| || || ||||| ||
Sbjct: 105 aatgtgactgagtgcattggtgggtctaggacagtaacctttgacgaattaagttcacgc 164
Query: 665 taccacacccactgtgaccctagactcaatgcttcacaatctctagagcttgcattcatc 724
|| ||||| || ||||| || || ||||||||||| |||||||| ||||| ||||| |||
Sbjct: 165 tatcacacacattgtgatcccaggctcaatgcttctcaatctcttgagctagcatttatc 224
Query: 725 attgcagagcgccttagaaagagaaggat 753
||||||||||| |||||||| || |||||
Sbjct: 225 attgcagagcgacttagaaaaaggaggat 253