Jatropha Genome Database

JcCA0134721.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0134721.20 + phase: 1 /TE
         (2428 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520299|gb|FM890147.1|FM890147 FM890147 Jatropha curcas emb...   163   1e-39

>gi|268520299|gb|FM890147.1|FM890147 FM890147 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003948,
            mRNA sequence
          Length = 571

 Score =  163 bits (82), Expect = 1e-39
 Identities = 155/178 (87%), Gaps = 1/178 (0%)
 Strand = Plus / Minus

                                                                        
Query: 870  aagatgagatggttgagttgggaacggctttgtgtagcgaaggaaaatggaggtttgggt 929
            ||||||||||||||||||| |||| |||| ||||| |||| |||| | ||||||||||||
Sbjct: 177  aagatgagatggttgagttaggaaaggctatgtgtggcgagggaagaaggaggtttgggt 118

                                                                        
Query: 930  tttagacatttacaaagtttcaatctggccttattaggaaagcactgttggaggctttta 989
            || ||||||||   |||||||| ||| | | | |||||||||||||||||||| ||||||
Sbjct: 117  ttcagacatttgagaagtttcattctagtcatgttaggaaagcactgttggagactttta 58

                                                                      
Query: 990  cacactacaaactctctcttttatagctctttcaaatctaaatatttcccaagtggga 1047
            || | ||| || |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 57   cataatac-aattctctcttttatagttctttcaaatctaaatattttccaagtggga 1