Jatropha Genome Database
- JcCA0130971.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0130971.10 - phase: 0
(1431 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268522595|gb|FM896636.1|FM896636 FM896636 Jatropha curcas emb... 611 e-175
gi|218686978|gb|GH295946.1|GH295946 JCL395 Jatropha curcas total... 416 e-116
gi|218687505|gb|GH295552.1|GH295552 JCL1 Jatropha curcas total l... 416 e-116
gi|268525341|gb|FM895983.1|FM895983 FM895983 Jatropha curcas emb... 101 2e-21
gi|268522307|gb|FM894452.1|FM894452 FM894452 Jatropha curcas emb... 80 8e-15
gi|268522498|gb|FM894643.1|FM894643 FM894643 Jatropha curcas emb... 80 8e-15
gi|268522715|gb|FM896158.1|FM896158 FM896158 Jatropha curcas emb... 80 8e-15
gi|268524060|gb|FM894739.1|FM894739 FM894739 Jatropha curcas emb... 80 8e-15
gi|268526415|gb|FM895269.1|FM895269 FM895269 Jatropha curcas emb... 80 8e-15
>gi|268522595|gb|FM896636.1|FM896636 FM896636 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003906,
mRNA sequence
Length = 579
Score = 611 bits (308), Expect = e-175
Identities = 493/554 (88%), Gaps = 3/554 (0%)
Strand = Plus / Plus
Query: 16 aacccagtcaaaatactagatgtgtgtcgagtcacccca---tcagtcaactcatccgag 72
|||||||| |||||||||||||| | ||||||||||||| ||| || |||||||||||
Sbjct: 26 aacccagttaaaatactagatgtttctcgagtcaccccaatatcaatcgactcatccgag 85
Query: 73 tttactactgagttatctctccctctcacattttatgatatcttttggctcaaattatac 132
|||||||||||||| |||||||| ||||||| || ||| |||||||||||||||||||||
Sbjct: 86 tttactactgagttctctctcccactcacatattttgacatcttttggctcaaattatac 145
Query: 133 ccaaatgagcaaatattttactatgagcaaaaagatttatccttgtcattctttgactct 192
|||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ccaactgaggaaatcttttactatgagcaaaaagatttatccttgtcattctttgactca 205
Query: 193 gtgatcatccccaaactcaaatcctctctttccctcactctccttcacttccttcctttt 252
||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 206 gtgattgtccccaagctcaaatcctctctttcccttgctctctttcacttccttccttta 265
Query: 253 gcaggaaacataatatggcctgcggatgttaccaaaccagtcattgtttacaacccaaat 312
| ||||||||| ||||||||| | ||||||| |||||||| ||||||||||||||||||
Sbjct: 266 ggaggaaacatcatatggcctccagatgttaacaaaccagccattgtttacaacccaaac 325
Query: 313 gatggtgtttccctcacaattgcagagtctaatgcagactttactcgtcttttgagcaac 372
|||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct: 326 gatggtgtttccctcacaattgcagagtctaacgcagattttactcgtctttcgagcaat 385
Query: 373 caaatgaatgaagctgttgaatcacatttttatgtgcctgagctagctatatctgactca 432
|| |||||||||||| |||| |||| | | ||||| |||||| ||||||||||||||||
Sbjct: 386 cagatgaatgaagctattgagtcacgtatatatgttcctgagttagctatatctgactcg 445
Query: 433 aaagtagcaactatagccattcagataacattatttccaaatcaaggcttttctattggc 492
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 446 aaagtagcaactattgccattcaaataacattatttccaaaacaaggcttttccattggc 505
Query: 493 atctcttgccatcatgctctcgttgatggcaagagcaaagctatgttcattaaagcatgg 552
||||||| ||| |||||| | ||||||| || ||||||| |||||| |||||| |||
Sbjct: 506 atctcttaccaccatgctgtacttgatggtaaaagcaaagtaatgttcgataaagcttgg 565
Query: 553 actcacatatgtaa 566
|||||||||||||
Sbjct: 566 gctcacatatgtaa 579
>gi|218686978|gb|GH295946.1|GH295946 JCL395 Jatropha curcas total leaf
library Jatropha curcas cDNA, mRNA sequence
Length = 735
Score = 416 bits (210), Expect = e-116
Identities = 318/354 (89%)
Strand = Plus / Minus
Query: 1060 gagaatggaattacttttgtagcagaaaggcttaccaatatgataaaagggctagataac 1119
||||||||||||||||| |||||||||| ||||| |||| || |||||| || |||
Sbjct: 735 gagaatggaattactttcgtagcagaaaagcttagtgatatcattaaaggggtatcaaac 676
Query: 1120 ggagtccttgagggagcaaaggagaagcttgcaaattttctgaaggaaatagagttaggt 1179
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 675 ggagttcttgaaggagcaaaggagaagcttgcaaattttctgaaggaaatggaggtaggt 616
Query: 1180 gaagtagaaatgattggagttcactcttcaccaaaatttgaggtttatgggacagatttt 1239
||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaagtagaagtatttggagtcaactcttcaccaaaatttgaggtttatgggacagatttt 556
Query: 1240 gggtgggggagaccaaagagggtggagtttacaactatagatcggactggaagcatttct 1299
|| | ||||||||||||||||||||||||||| ||||||||| || |||| ||||||||
Sbjct: 555 ggttttgggagaccaaagagggtggagtttacatctatagatctgagtggaggcatttct 496
Query: 1300 atgtccgagagcaaagatgggactggaggcattgaggttggtttagttttgaagcagcat 1359
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct: 495 atgtccgagagcaaagatgggagtggtggcattgaggttggtttagttttgaagcaacat 436
Query: 1360 gaaatgaagttgtttaagtctctatttgtcaatggccttctagaccgcgaagca 1413
|||||| ||||||| || ||||||||||| ||||||||||||||| |||||||
Sbjct: 435 gaaatggagttgttcaattctctatttgttaatggccttctagacaacgaagca 382
>gi|218687505|gb|GH295552.1|GH295552 JCL1 Jatropha curcas total leaf
library Jatropha curcas cDNA, mRNA sequence
Length = 735
Score = 416 bits (210), Expect = e-116
Identities = 318/354 (89%)
Strand = Plus / Minus
Query: 1060 gagaatggaattacttttgtagcagaaaggcttaccaatatgataaaagggctagataac 1119
||||||||||||||||| |||||||||| ||||| |||| || |||||| || |||
Sbjct: 735 gagaatggaattactttcgtagcagaaaagcttagtgatatcattaaaggggtatcaaac 676
Query: 1120 ggagtccttgagggagcaaaggagaagcttgcaaattttctgaaggaaatagagttaggt 1179
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 675 ggagttcttgaaggagcaaaggagaagcttgcaaattttctgaaggaaatggaggtaggt 616
Query: 1180 gaagtagaaatgattggagttcactcttcaccaaaatttgaggtttatgggacagatttt 1239
||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaagtagaagtatttggagtcaactcttcaccaaaatttgaggtttatgggacagatttt 556
Query: 1240 gggtgggggagaccaaagagggtggagtttacaactatagatcggactggaagcatttct 1299
|| | ||||||||||||||||||||||||||| ||||||||| || |||| ||||||||
Sbjct: 555 ggttttgggagaccaaagagggtggagtttacatctatagatctgagtggaggcatttct 496
Query: 1300 atgtccgagagcaaagatgggactggaggcattgaggttggtttagttttgaagcagcat 1359
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct: 495 atgtccgagagcaaagatgggagtggtggcattgaggttggtttagttttgaagcaacat 436
Query: 1360 gaaatgaagttgtttaagtctctatttgtcaatggccttctagaccgcgaagca 1413
|||||| ||||||| || ||||||||||| ||||||||||||||| |||||||
Sbjct: 435 gaaatggagttgttcaattctctatttgttaatggccttctagacaacgaagca 382
>gi|268525341|gb|FM895983.1|FM895983 FM895983 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003106,
mRNA sequence
Length = 617
Score = 101 bits (51), Expect = 2e-21
Identities = 162/199 (81%)
Strand = Plus / Minus
Query: 1205 cttcaccaaaatttgaggtttatgggacagattttgggtgggggagaccaaagagggtgg 1264
|||||||||||||||| ||||||| ||| |||||||||||||| |||||||||| ||| |
Sbjct: 348 cttcaccaaaatttgaagtttatgagacggattttgggtggggaagaccaaagaaggttg 289
Query: 1265 agtttacaactatagatcggactggaagcatttctatgtccgagagcaaagatgggactg 1324
| |||||| ||||||| ||| |||| |||||||| ||| ||||||||| | | ||
Sbjct: 288 attttacatctatagactggaatggaggcatttctttgttgaagagcaaaggttcaaatg 229
Query: 1325 gaggcattgaggttggtttagttttgaagcagcatgaaatgaagttgtttaagtctctat 1384
| || ||||||||||| ||||| || || ||| ||||||| || | || || || ||||
Sbjct: 228 gcggtgttgaggttggtatagttctggagaagcgtgaaatggagattttcaattcactat 169
Query: 1385 ttgtcaatggccttctaga 1403
|||| ||||||||| ||||
Sbjct: 168 ttgttaatggccttataga 150
>gi|268522307|gb|FM894452.1|FM894452 FM894452 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000120,
mRNA sequence
Length = 425
Score = 79.8 bits (40), Expect = 8e-15
Identities = 142/176 (80%)
Strand = Plus / Plus
Query: 116 tttggctcaaattatacccaaatgagcaaatattttactatgagcaaaaagatttatcct 175
|||| |||||||| || ||| ||||||||| |||| ||||||| || ||||| | |
Sbjct: 136 tttgcctcaaattttatccagttgagcaaatctttttctatgagttcaacaatttaactt 195
Query: 176 tgtcattctttgactctgtgatcatccccaaactcaaatcctctctttccctcactctcc 235
|||||||||| |||| ||||||||||| ||||||||||| || || || || ||||||
Sbjct: 196 tgtcattcttcaactcagtgatcatccctaaactcaaatcatcactctcacttgctctcc 255
Query: 236 ttcacttccttccttttgcaggaaacataatatggcctgcggatgttaccaaacca 291
| || ||||||||| | ||||||||||| | ||||||| | ||| ||||||||||
Sbjct: 256 tccatttccttcctctagcaggaaacatcaaatggccttctaatgctaccaaacca 311
>gi|268522498|gb|FM894643.1|FM894643 FM894643 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000453,
mRNA sequence
Length = 556
Score = 79.8 bits (40), Expect = 8e-15
Identities = 142/176 (80%)
Strand = Plus / Plus
Query: 116 tttggctcaaattatacccaaatgagcaaatattttactatgagcaaaaagatttatcct 175
|||| |||||||| || ||| ||||||||| |||| ||||||| || ||||| | |
Sbjct: 143 tttgcctcaaattttatccagttgagcaaatctttttctatgagttcaacaatttaactt 202
Query: 176 tgtcattctttgactctgtgatcatccccaaactcaaatcctctctttccctcactctcc 235
|||||||||| |||| ||||||||||| ||||||||||| || || || || ||||||
Sbjct: 203 tgtcattcttcaactcagtgatcatccctaaactcaaatcatcactctcacttgctctcc 262
Query: 236 ttcacttccttccttttgcaggaaacataatatggcctgcggatgttaccaaacca 291
| || ||||||||| | ||||||||||| | ||||||| | ||| ||||||||||
Sbjct: 263 tccatttccttcctctagcaggaaacatcaaatggccttctaatgctaccaaacca 318
>gi|268522715|gb|FM896158.1|FM896158 FM896158 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003323,
mRNA sequence
Length = 516
Score = 79.8 bits (40), Expect = 8e-15
Identities = 142/176 (80%)
Strand = Plus / Plus
Query: 116 tttggctcaaattatacccaaatgagcaaatattttactatgagcaaaaagatttatcct 175
|||| |||||||| || ||| ||||||||| |||| ||||||| || ||||| | |
Sbjct: 135 tttgcctcaaattttatccagttgagcaaatctttttctatgagttcaacaatttaactt 194
Query: 176 tgtcattctttgactctgtgatcatccccaaactcaaatcctctctttccctcactctcc 235
|||||||||| |||| ||||||||||| ||||||||||| || || || || ||||||
Sbjct: 195 tgtcattcttcaactcagtgatcatccctaaactcaaatcatcactctcacttgctctcc 254
Query: 236 ttcacttccttccttttgcaggaaacataatatggcctgcggatgttaccaaacca 291
| || ||||||||| | ||||||||||| | ||||||| | ||| ||||||||||
Sbjct: 255 tccatttccttcctctagcaggaaacatcaaatggccttctaatgctaccaaacca 310
>gi|268524060|gb|FM894739.1|FM894739 FM894739 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000592,
mRNA sequence
Length = 508
Score = 79.8 bits (40), Expect = 8e-15
Identities = 142/176 (80%)
Strand = Plus / Plus
Query: 116 tttggctcaaattatacccaaatgagcaaatattttactatgagcaaaaagatttatcct 175
|||| |||||||| || ||| ||||||||| |||| ||||||| || ||||| | |
Sbjct: 136 tttgcctcaaattttatccagttgagcaaatctttttctatgagttcaacaatttaactt 195
Query: 176 tgtcattctttgactctgtgatcatccccaaactcaaatcctctctttccctcactctcc 235
|||||||||| |||| ||||||||||| ||||||||||| || || || || ||||||
Sbjct: 196 tgtcattcttcaactcagtgatcatccctaaactcaaatcatcactctcacttgctctcc 255
Query: 236 ttcacttccttccttttgcaggaaacataatatggcctgcggatgttaccaaacca 291
| || ||||||||| | ||||||||||| | ||||||| | ||| ||||||||||
Sbjct: 256 tccatttccttcctctagcaggaaacatcaaatggccttctaatgctaccaaacca 311
>gi|268526415|gb|FM895269.1|FM895269 FM895269 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002067,
mRNA sequence
Length = 456
Score = 79.8 bits (40), Expect = 8e-15
Identities = 142/176 (80%)
Strand = Plus / Plus
Query: 116 tttggctcaaattatacccaaatgagcaaatattttactatgagcaaaaagatttatcct 175
|||| |||||||| || ||| ||||||||| |||| ||||||| || ||||| | |
Sbjct: 136 tttgcctcaaattttatccagttgagcaaatctttttctatgagttcaacaatttaactt 195
Query: 176 tgtcattctttgactctgtgatcatccccaaactcaaatcctctctttccctcactctcc 235
|||||||||| |||| ||||||||||| ||||||||||| || || || || ||||||
Sbjct: 196 tgtcattcttcaactcagtgatcatccctaaactcaaatcatcactctcacttgctctcc 255
Query: 236 ttcacttccttccttttgcaggaaacataatatggcctgcggatgttaccaaacca 291
| || ||||||||| | ||||||||||| | ||||||| | ||| ||||||||||
Sbjct: 256 tccatttccttcctctagcaggaaacatcaaatggccttctaatgctaccaaacca 311