Jatropha Genome Database

JcCA0126681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0126681.10 + phase: 0 
         (1308 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas emb...   573   e-163

>gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004251,
           mRNA sequence
          Length = 525

 Score =  573 bits (289), Expect = e-163
 Identities = 448/498 (89%), Gaps = 16/498 (3%)
 Strand = Plus / Plus

                                                                       
Query: 205 ctttttagtgctaaaagagttcaatcgtttcaatcc-gttagagaagaagaagtgggtct 263
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 1   ctttttagtgctaaaagagctcaatcgtttcaatcctgttagagaagaagaagtgggtct 60

                                                                       
Query: 264 tttcatagattcgattttaaaagcttcttcttcttcttcccctgtggatcttactgaaaa 323
           |||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct: 61  tttcatagattcgattttaaaatcttcttcttcttcttctcctgtggatcttagtgaaaa 120

                                                                       
Query: 324 gactatatctcttactgcaaatgttacttgtagagtggctttggggaatagttttgaagc 383
            | ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| | |
Sbjct: 121 aattatgtctcttactgcaaatgttacttgtagagtagcttttgggaatagttttgcaac 180

                                                                       
Query: 384 aagcagatttacccagaaa------------gtgattcatgaagctcttgccaagttaga 431
           |||  ||||||||||| ||            ||||||||||||||| | |||||||||| 
Sbjct: 181 aagaggatttacccaggaaaggtttcaagaagtgattcatgaagctttagccaagttagg 240

                                                                       
Query: 432 gtgtttttctgcatctgacttttttccttatgtgggttggattgttgatagggttacagg 491
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggtttttctgcatctgacttttttccttatgtgggttggattgttgatagggttacagg 300

                                                                       
Query: 492 tctccatgcagaactggaaagaaactttcaaaaacttgatgaattctaccagaagattat 551
           ||||||| || |||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 301 tctccattcaaaactggaaagaagctttcaagaacttgatgaattccaccagaagattat 360

                                                                       
Query: 552 tgatgatcatatcc-aaagggaaaagagaagcatggacatcaagatattgtcgatgtttt 610
           ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct: 361 tgaggatcatatccaaaacggaaaagagaagcatggacatcaagatattgtcgatg-tat 419

                                                                       
Query: 611 tgctggatttggagagatatcaacctgaacctggaggaattcaattcactaaaaatcac- 669
            |  ||||||||||||||||||| ||||| ||| ||||||||||||| |||||| |||| 
Sbjct: 420 agtcggatttggagagatatcaaactgaatctgaaggaattcaattctctaaaagtcaca 479

                             
Query: 670 atcaaagcaattatcatg 687
           ||||||||||||||||||
Sbjct: 480 atcaaagcaattatcatg 497