Jatropha Genome Database
- JcCA0124671.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0124671.10 - phase: 0
(591 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268517537|gb|FM889248.1|FM889248 FM889248 Jatropha curcas emb... 359 2e-99
gi|268516974|gb|FM892526.1|FM892526 FM892526 Jatropha curcas emb... 168 5e-42
gi|268523729|gb|FM892262.1|FM892262 FM892262 Jatropha curcas emb... 168 5e-42
gi|268525534|gb|FM890789.1|FM890789 FM890789 Jatropha curcas emb... 168 5e-42
gi|268525702|gb|FM890957.1|FM890957 FM890957 Jatropha curcas emb... 68 1e-11
>gi|268517537|gb|FM889248.1|FM889248 FM889248 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002854,
mRNA sequence
Length = 327
Score = 359 bits (181), Expect = 2e-99
Identities = 184/185 (99%)
Strand = Plus / Plus
Query: 407 caccaatcacaacttctcagggagaggaactaaagaagatgattggtgctgctgtttaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccaatcacaacttctcagggagaggaactaaagaagatgattggtgctgctgtttaca 60
Query: 467 ttgagtgcagctcaaagactcaacagaatgtgaaggcagtttttgacgcagcaatcaaag 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgagtgcagctcaaagactcaacagaatgtgaaggcagtttttgacgcagcaatcaaag 120
Query: 527 ttgtcttgcagcctcctaaacccaagaagagaaaaaggaagccaaggccttgtttgtttt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgtcttgcagcctcctaaacccaagaagagaaaaaggaagccaaggccttgtttgtttt 180
Query: 587 tgtaa 591
|||||
Sbjct: 181 tgtaa 185
>gi|268516974|gb|FM892526.1|FM892526 FM892526 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003095,
mRNA sequence
Length = 595
Score = 168 bits (85), Expect = 5e-42
Identities = 160/185 (86%)
Strand = Plus / Plus
Query: 37 ggtgatggtgctgttgggaagacatgtatgctcatctcttacacaagcaacaccttccct 96
||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| || |||
Sbjct: 182 ggtgatggtgctgttggcaagacttgcatgctcatctcctacaccagcaacacttttcct 241
Query: 97 actgattatgtccctacagtgtttgataatttcagtgctaatgtggtggttgatggtagc 156
||||| ||||| ||||| |||||||| || |||||||| |||||||| || ||||| |||
Sbjct: 242 actgactatgtgcctactgtgtttgacaacttcagtgcgaatgtggttgtggatgggagc 301
Query: 157 acagtcaatcttggattatgggatactgcaggacaggaagattataacagactaaggcct 216
||||||||||| || || ||||||||||| || |||||||||||||| ||| |||| |||
Sbjct: 302 acagtcaatctagggttgtgggatactgctggccaggaagattataatagattaagacct 361
Query: 217 ctgag 221
||||
Sbjct: 362 ttgag 366
>gi|268523729|gb|FM892262.1|FM892262 FM892262 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_002766,
mRNA sequence
Length = 569
Score = 168 bits (85), Expect = 5e-42
Identities = 160/185 (86%)
Strand = Plus / Plus
Query: 37 ggtgatggtgctgttgggaagacatgtatgctcatctcttacacaagcaacaccttccct 96
||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| || |||
Sbjct: 204 ggtgatggtgctgttggcaagacttgcatgctcatctcctacaccagcaacacttttcct 263
Query: 97 actgattatgtccctacagtgtttgataatttcagtgctaatgtggtggttgatggtagc 156
||||| ||||| ||||| |||||||| || |||||||| |||||||| || ||||| |||
Sbjct: 264 actgactatgtgcctactgtgtttgacaacttcagtgcgaatgtggttgtggatgggagc 323
Query: 157 acagtcaatcttggattatgggatactgcaggacaggaagattataacagactaaggcct 216
||||||||||| || || ||||||||||| || |||||||||||||| ||| |||| |||
Sbjct: 324 acagtcaatctagggttgtgggatactgctggccaggaagattataatagattaagacct 383
Query: 217 ctgag 221
||||
Sbjct: 384 ttgag 388
>gi|268525534|gb|FM890789.1|FM890789 FM890789 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000728,
mRNA sequence
Length = 546
Score = 168 bits (85), Expect = 5e-42
Identities = 160/185 (86%)
Strand = Plus / Plus
Query: 37 ggtgatggtgctgttgggaagacatgtatgctcatctcttacacaagcaacaccttccct 96
||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| || |||
Sbjct: 211 ggtgatggtgctgttggcaagacttgcatgctcatctcctacaccagcaacacttttcct 270
Query: 97 actgattatgtccctacagtgtttgataatttcagtgctaatgtggtggttgatggtagc 156
||||| ||||| ||||| |||||||| || |||||||| |||||||| || ||||| |||
Sbjct: 271 actgactatgtgcctactgtgtttgacaacttcagtgcgaatgtggttgtggatgggagc 330
Query: 157 acagtcaatcttggattatgggatactgcaggacaggaagattataacagactaaggcct 216
||||||||||| || || ||||||||||| || |||||||||||||| ||| |||| |||
Sbjct: 331 acagtcaatctagggttgtgggatactgctggccaggaagattataatagattaagacct 390
Query: 217 ctgag 221
||||
Sbjct: 391 ttgag 395
>gi|268525702|gb|FM890957.1|FM890957 FM890957 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000928,
mRNA sequence
Length = 483
Score = 67.9 bits (34), Expect = 1e-11
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 422 ctcagggagaggaactaaagaagatgattggtgctgctgtttacattgagtgcagctcaa 481
||||||| |||||||| | ||| | ||||| ||| |||||||||||||||| || || |
Sbjct: 120 ctcagggggaggaactgagaaagctaattggagctcctgtttacattgagtgtagttcta 179
Query: 482 agactcaacagaatgtgaaggcagtttttgacgcagcaatcaaagt 527
| ||||| ||||||||||| ||||| ||||| ||||| || |||||
Sbjct: 180 aaactcagcagaatgtgaaagcagtctttgatgcagccattaaagt 225