Jatropha Genome Database

JcCA0118311.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0118311.10 + phase: 0 /pseudo/partial
         (622 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262090512|gb|GT228870.1|GT228870 JC435 Jatropha seeds from fr...   212   4e-55
gi|268525133|gb|FM895775.1|FM895775 FM895775 Jatropha curcas emb...    96   6e-20

>gi|262090512|gb|GT228870.1|GT228870 JC435 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL09SE.H03.scf 5', mRNA sequence
          Length = 377

 Score =  212 bits (107), Expect = 4e-55
 Identities = 121/123 (98%), Gaps = 2/123 (1%)
 Strand = Plus / Minus

                                                                       
Query: 502 cttgtttatca-ggatagtgaaggtgacacgatacttgttgggga-tgtcccttggcaaa 559
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 368 cttgtttatcaaggatagtgaaggtgacacgatacttgttggggaatgtcccttggcaaa 309

                                                                       
Query: 560 tgtttgtaagtacagcaaaaaggctgcgcgtgctgaagagctctgaactttccaccccac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgtttgtaagtacagcaaaaaggctgcgcgtgctgaagagctctgaactttccaccccac 249

              
Query: 620 gac 622
           |||
Sbjct: 248 gac 246


>gi|268525133|gb|FM895775.1|FM895775 FM895775 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002757,
           mRNA sequence
          Length = 630

 Score = 95.6 bits (48), Expect = 6e-20
 Identities = 72/80 (90%)
 Strand = Plus / Plus

                                                                       
Query: 487 agtggggaatatactcttgtttatcaggatagtgaaggtgacacgatacttgttggggat 546
           |||||||||||||| ||||||||| |||||| |||||| |||| ||| ||||||||||||
Sbjct: 436 agtggggaatatacgcttgtttatgaggataatgaaggagacaggatgcttgttggggat 495

                               
Query: 547 gtcccttggcaaatgtttgt 566
           ||||| ||||| ||||||||
Sbjct: 496 gtcccatggcacatgtttgt 515



 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 86/104 (82%)
 Strand = Plus / Plus

                                                                       
Query: 310 ggtgtccctattggaagaaaaataaatctcaatgcctatgacagctatcagaaactttct 369
           ||||| ||||||||||| ||| || |||| || ||||||||||||||| |||| ||||||
Sbjct: 262 ggtgttcctattggaaggaaagtagatcttaaagcctatgacagctatgagaagctttct 321

                                                       
Query: 370 gtcgccattgatgagctcttcaggggtctgcttgcagctcaaag 413
              ||  ||||||| || ||||| || || ||||||||||||||
Sbjct: 322 actgctgttgatgaactattcagaggcctacttgcagctcaaag 365