Jatropha Genome Database

JcCA0094041.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0094041.10 + phase: 0 /pseudo
         (1465 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas emb...   327   2e-89

>gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004251,
           mRNA sequence
          Length = 525

 Score =  327 bits (165), Expect = 2e-89
 Identities = 395/472 (83%), Gaps = 4/472 (0%)
 Strand = Plus / Plus

                                                                       
Query: 403 ctttttagcgctaaaagagttcaatcattccaatcca-ttagagaagaagaagtgcgttt 461
           |||||||| |||||||||| |||||| || ||||||  ||||||||||||||||| || |
Sbjct: 1   ctttttagtgctaaaagagctcaatcgtttcaatcctgttagagaagaagaagtgggtct 60

                                                                       
Query: 462 tttaatcgattcgattttaaaatcttcttcagcctcttcttctcctgttcatctaagtga 521
           ||| || |||||||||||||||||||||||    ||||||||||||||  |||| |||||
Sbjct: 61  tttcatagattcgattttaaaatcttcttct---tcttcttctcctgtggatcttagtga 117

                                                                       
Query: 522 aaagactttgtctcttactgcaaatgttacctgcagagtagcttttggggaaagttttca 581
           ||| | | |||||||||||||||||||||| || ||||||||||||||| | ||||||  
Sbjct: 118 aaaaattatgtctcttactgcaaatgttacttgtagagtagcttttgggaatagttttgc 177

                                                                       
Query: 582 agaaagaggacttgcccatgaaagatttcaagaagtgattcatgaagggttggctatgtt 641
           |  ||||||| || |||| ||||| ||||||||||||||||||||||  || || | |||
Sbjct: 178 aacaagaggatttacccaggaaaggtttcaagaagtgattcatgaagctttagccaagtt 237

                                                                       
Query: 642 ggggagtttttctgcagctgannnnnnnccttatgtgggttggattgttgataggcttac 701
            ||| ||||||||||| ||||       ||||||||||||||||||||||||||| ||||
Sbjct: 238 agggggtttttctgcatctgacttttttccttatgtgggttggattgttgatagggttac 297

                                                                       
Query: 702 aggtctccatgaaagactagaaagaaactttcaagaatttgatgagttctaccaaaagat 761
           ||||||||||  || ||| ||||||| |||||||||| ||||||| ||| |||| |||||
Sbjct: 298 aggtctccattcaaaactggaaagaagctttcaagaacttgatgaattccaccagaagat 357

                                                                       
Query: 762 tattgatgatcatatccaaaagggaaaagcagatcctggacatgaagatatcattgatgt 821
           |||||| |||||||||||||| |||||||   | | ||||||| |||||||  | |||||
Sbjct: 358 tattgaggatcatatccaaaacggaaaagagaagcatggacatcaagatattgtcgatgt 417

                                                               
Query: 822 ttcgttggaaatggagaaagatcaaactgaatctggtggaattcaattctct 873
            | || |||  |||||| | |||||||||||||||  |||||||||||||||
Sbjct: 418 atagtcggatttggagagatatcaaactgaatctgaaggaattcaattctct 469