Jatropha Genome Database
- JcCA0081341.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0081341.20 - phase: 0 /pseudo/partial
(312 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268523623|gb|FM892156.1|FM892156 FM892156 Jatropha curcas emb... 86 3e-17
gi|268524112|gb|FM894791.1|FM894791 FM894791 Jatropha curcas emb... 84 1e-16
gi|268522948|gb|FM896391.1|FM896391 FM896391 Jatropha curcas emb... 74 1e-13
gi|268524642|gb|FM895340.1|FM895340 FM895340 Jatropha curcas emb... 74 1e-13
gi|268516931|gb|FM892483.1|FM892483 FM892483 Jatropha curcas emb... 68 6e-12
gi|268521582|gb|FM896790.1|FM896790 FM896790 Jatropha curcas emb... 50 1e-06
gi|268526125|gb|FM891381.1|FM891381 FM891381 Jatropha curcas emb... 50 1e-06
>gi|268523623|gb|FM892156.1|FM892156 FM892156 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002651,
mRNA sequence
Length = 489
Score = 85.7 bits (43), Expect = 3e-17
Identities = 151/187 (80%)
Strand = Plus / Plus
Query: 37 acattttgccaattcttcttcagtagtgaaacgaggaaattgacactcaattggacattc 96
||||||||||| |||||||||| | ||||| ||||||||||| |||| ||| |||||
Sbjct: 293 acattttgccagttcttcttcaacaaggaaacaaggaaattgacgctcatttgcacattt 352
Query: 97 tggaaaatctgcttctcctccattccacagtgccccacagcaacacccatgcaaagaacc 156
||||| | |||||||||||||| |||||| || |||||||| |||||||| || ||
Sbjct: 353 tggaagacttgcttctcctccatagcacagttgccaacagcaactcccatgcagagcact 412
Query: 157 ttcttaagctggaacttcactatagcttttgtctcattaaccttatcttccagagaatcc 216
||||| | |||||||||||| | || ||||| ||||| || ||| || || ||||||
Sbjct: 413 ttcttcaattggaacttcactgttgcctttgtttcattcactttaaactctagggaatcc 472
Query: 217 tgatggg 223
|||||||
Sbjct: 473 tgatggg 479
>gi|268524112|gb|FM894791.1|FM894791 FM894791 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000660,
mRNA sequence
Length = 567
Score = 83.8 bits (42), Expect = 1e-16
Identities = 129/158 (81%)
Strand = Plus / Plus
Query: 37 acattttgccaattcttcttcagtagtgaaacgaggaaattgacactcaattggacattc 96
||||||||||| |||||||||| | ||||| ||||||||||| |||| ||| |||||
Sbjct: 301 acattttgccagttcttcttcaacaaggaaacaaggaaattgacgctcatttgcacattt 360
Query: 97 tggaaaatctgcttctcctccattccacagtgccccacagcaacacccatgcaaagaacc 156
||||| | |||||||||||||| |||||| || |||||||| |||||||| || ||
Sbjct: 361 tggaagacttgcttctcctccatagcacagttgccaacagcaactcccatgcagagcact 420
Query: 157 ttcttaagctggaacttcactatagcttttgtctcatt 194
||||| | |||||||||||| | || ||||| |||||
Sbjct: 421 ttcttcaattggaacttcactgttgcctttgtttcatt 458
>gi|268522948|gb|FM896391.1|FM896391 FM896391 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003605,
mRNA sequence
Length = 510
Score = 73.8 bits (37), Expect = 1e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 244 ttgttaaggccaggacccaaaagacgaggaatctgcttgatgacagattcagaagctaaa 303
||||| || ||||| |||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct: 376 ttgttgagaccagggcccagaagacgaggaatctgcttgatgacagattctgaagccaag 317
Query: 304 aatgcatgg 312
|| ||||||
Sbjct: 316 aaggcatgg 308
>gi|268524642|gb|FM895340.1|FM895340 FM895340 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002148,
mRNA sequence
Length = 507
Score = 73.8 bits (37), Expect = 1e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 244 ttgttaaggccaggacccaaaagacgaggaatctgcttgatgacagattcagaagctaaa 303
||||| || ||||| |||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct: 426 ttgttgagaccagggcccagaagacgaggaatctgcttgatgacagattctgaagccaag 367
Query: 304 aatgcatgg 312
|| ||||||
Sbjct: 366 aaggcatgg 358
>gi|268516931|gb|FM892483.1|FM892483 FM892483 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003046,
mRNA sequence
Length = 424
Score = 67.9 bits (34), Expect = 6e-12
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 259 cccaaaagacgaggaatctgcttgatgacagattcagaagctaaaaatgcatgg 312
|||| |||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 420 cccagaagacgaggaatctgcttgatgacagattctgaagccaagaaggcatgg 367
>gi|268521582|gb|FM896790.1|FM896790 FM896790 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004087,
mRNA sequence
Length = 580
Score = 50.1 bits (25), Expect = 1e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 37 acattttgccaattcttcttcagtagtgaaacgaggaaattgacactcaattggacattc 96
||||||||||| |||||||||| | ||||| ||||||||||| |||| ||| |||||
Sbjct: 301 acattttgccagttcttcttcaacaaggaaacaaggaaattgacgctcatttgcacattt 360
Query: 97 tggaa 101
|||||
Sbjct: 361 tggaa 365
>gi|268526125|gb|FM891381.1|FM891381 FM891381 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001655,
mRNA sequence
Length = 317
Score = 50.1 bits (25), Expect = 1e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 37 acattttgccaattcttcttcagtagtgaaacgaggaaattgacactcaattggacattc 96
||||||||||| |||||||||| | ||||| ||||||||||| |||| ||| |||||
Sbjct: 245 acattttgccagttcttcttcaacaaggaaacaaggaaattgacgctcatttgcacattt 304
Query: 97 tggaa 101
|||||
Sbjct: 305 tggaa 309