Jatropha Genome Database
- JcCA0081131.40
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0081131.40 - phase: 0
(1083 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268524907|gb|FM895605.1|FM895605 FM895605 Jatropha curcas emb... 1132 0.0
gi|268524507|gb|FM895187.1|FM895187 FM895187 Jatropha curcas emb... 1128 0.0
gi|268524290|gb|FM894970.1|FM894970 FM894970 Jatropha curcas emb... 1063 0.0
gi|268522345|gb|FM894490.1|FM894490 FM894490 Jatropha curcas emb... 579 e-165
gi|262091180|gb|GT228607.1|GT228607 JC172 Jatropha seeds from fr... 571 e-163
gi|268519749|gb|FM888216.1|FM888216 FM888216 Jatropha curcas emb... 492 e-139
gi|268520085|gb|FM889933.1|FM889933 FM889933 Jatropha curcas emb... 272 8e-73
>gi|268524907|gb|FM895605.1|FM895605 FM895605 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002555,
mRNA sequence
Length = 590
Score = 1132 bits (571), Expect = 0.0
Identities = 581/583 (99%), Gaps = 1/583 (0%)
Strand = Plus / Plus
Query: 456 cacaatcaacgagtatcaggttaaccgtgcgcgtttgcacaacaagaaagccggtctcga 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 cacaatcaacgagtatcaggttaaccgtgcgcgtttgcacaacaagaaagccggtctcga 67
Query: 516 ttcgctttgtgaagttgtttgtgggaatttccttgagatgccgtttccagacaacagttt 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttcgctttgtgaagttgtttgtgggaatttccttgagatgccgtttccagacaacagttt 127
Query: 576 cgacggcgcgtactctatcgaagctacttgtcacgcgccgaagctggaagaggtatacgc 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 cgacggcgcgtactctatcgaagctacttgtcacgcgccgaagctggaagaggtatacgc 187
Query: 636 agagatctttcgagtgttgaagccaggatctctctacgtgtcctacgaatgggtcacaac 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 agagatctttcgagtgttgaagccaggatctctctacgtgtcctacgaatgggtcacaac 247
Query: 696 tgacaagtacagggctagtgatcctcaacacgtggagatcattcaaggcattgaaagagg 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgacaagtacagggctagtgatcctcaacacgtggagatcattcaaggcattgaaagagg 307
Query: 756 agatgctttgccggggctgagaagctacgcagacattgccgagacggcgagaaaggtagg 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agatgctttgccggggctgagaagctacgcagacattgccgagacggcgagaaaggtagg 367
Query: 816 gttcgaagtagtgaaagagaaggatttagcaaaaccaccagcgcagccatggtggactag 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gttcgaagtagtgaaagagaaggatttagcaaaaccaccagcgcagccatggtggactag 427
Query: 876 gctaaagatgggaagga-ttgcctactggaggaatcacattctcgttactatattggctg 934
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gctaaagatgggaaggatttgcctactggaggaatcacattctcgttactatattggctg 487
Query: 935 ctttgggtatcgcaccgaagggaaccgtggatgtccacgagatgcttttcaaaacagccg 994
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 488 ctttgggtatcgcaccgaagggaaccgtggatgtccacgagatgcttttcagaacagccg 547
Query: 995 atcatttgacacagggcggcgagactggaattttctctccgat 1037
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atcatttgacacagggcggcgagactggaattttctctccgat 590
>gi|268524507|gb|FM895187.1|FM895187 FM895187 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001968,
mRNA sequence
Length = 592
Score = 1128 bits (569), Expect = 0.0
Identities = 588/593 (99%), Gaps = 1/593 (0%)
Strand = Plus / Plus
Query: 352 ctcatcgatgtgaagcctggagaacgaatcctggacgttggatgcggcgtcgggggcccc 411
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcatcgat-tgaagcctggagaacgaatcctggacgttggatgcggcgtcgggggcccc 59
Query: 412 atgcgcgccatcgccgctcactcgcgcgctaatgttgtaggcatcacaatcaacgagtat 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 atgcgcgccatcgccgctcactcgcgcgctaatgttgtaggcatcacaatcaacgagtat 119
Query: 472 caggttaaccgtgcgcgtttgcacaacaagaaagccggtctcgattcgctttgtgaagtt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 caggttaaccgtgcgcgtttgcacaacaagaaagccggtctcgattcgctttgtgaagtt 179
Query: 532 gtttgtgggaatttccttgagatgccgtttccagacaacagtttcgacggcgcgtactct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gtttgtgggaatttccttgagatgccgtttccagacaacagtttcgacggcgcgtactct 239
Query: 592 atcgaagctacttgtcacgcgccgaagctggaagaggtatacgcagagatctttcgagtg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atcgaagctacttgtcacgcgccgaagctggaagaggtatacgcagagatctttcgagtg 299
Query: 652 ttgaagccaggatctctctacgtgtcctacgaatgggtcacaactgacaagtacagggct 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttgaagccaggatctctctacgtgtcctacgaatgggtcacaactgacaagtacagggct 359
Query: 712 agtgatcctcaacacgtggagatcattcaaggcattgaaagaggagatgctttgccgggg 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agtgatcctcaacacgtggagatcattcaaggcattgaaagaggagatgctttgccgggg 419
Query: 772 ctgagaagctacgcagacattgccgagacggcgagaaaggtagggttcgaagtagtgaaa 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctgagaagctacgcagacattgccgagacggcgagaaaggtagggttcgaagtagtgaaa 479
Query: 832 gagaaggatttagcaaaaccaccagcgcagccatggtggactaggctaaagatgggaagg 891
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 480 gagaaggatttagcaaaaccaccagcgcagccatggtggactaggctaaagatgccctgg 539
Query: 892 attgcctactggaggaatcacattctcgttactatattggctgctttgggtat 944
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 attgcctactggaggaatcacattctcgttactatattggctgctttgggtat 592
>gi|268524290|gb|FM894970.1|FM894970 FM894970 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000885,
mRNA sequence
Length = 636
Score = 1063 bits (536), Expect = 0.0
Identities = 539/540 (99%)
Strand = Plus / Plus
Query: 544 ttccttgagatgccgtttccagacaacagtttcgacggcgcgtactctatcgaagctact 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttccttgagatgccgtttccagacaacagtttcgacggcgcgtactctatcgaagctact 60
Query: 604 tgtcacgcgccgaagctggaagaggtatacgcagagatctttcgagtgttgaagccagga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtcacgcgccgaagctggaagaggtatacgcagagatctttcgagtgttgaagccagga 120
Query: 664 tctctctacgtgtcctacgaatgggtcacaactgacaagtacagggctagtgatcctcaa 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctctctacgtgtcctacgaatgggtcacaactgacaagtacagggctagtgatcctcaa 180
Query: 724 cacgtggagatcattcaaggcattgaaagaggagatgctttgccggggctgagaagctac 783
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 181 cacgtggagatcattcaaggcattgaacgaggagatgctttgccggggctgagaagctac 240
Query: 784 gcagacattgccgagacggcgagaaaggtagggttcgaagtagtgaaagagaaggattta 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcagacattgccgagacggcgagaaaggtagggttcgaagtagtgaaagagaaggattta 300
Query: 844 gcaaaaccaccagcgcagccatggtggactaggctaaagatgggaaggattgcctactgg 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcaaaaccaccagcgcagccatggtggactaggctaaagatgggaaggattgcctactgg 360
Query: 904 aggaatcacattctcgttactatattggctgctttgggtatcgcaccgaagggaaccgtg 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggaatcacattctcgttactatattggctgctttgggtatcgcaccgaagggaaccgtg 420
Query: 964 gatgtccacgagatgcttttcaaaacagccgatcatttgacacagggcggcgagactgga 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatgtccacgagatgcttttcaaaacagccgatcatttgacacagggcggcgagactgga 480
Query: 1024 attttctctccgatgcatatggttctctgcagaaaacctgagagcccttcaaattcttaa 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attttctctccgatgcatatggttctctgcagaaaacctgagagcccttcaaattcttaa 540
>gi|268522345|gb|FM894490.1|FM894490 FM894490 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000163,
mRNA sequence
Length = 508
Score = 579 bits (292), Expect = e-165
Identities = 292/292 (100%)
Strand = Plus / Minus
Query: 792 tgccgagacggcgagaaaggtagggttcgaagtagtgaaagagaaggatttagcaaaacc 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgccgagacggcgagaaaggtagggttcgaagtagtgaaagagaaggatttagcaaaacc 449
Query: 852 accagcgcagccatggtggactaggctaaagatgggaaggattgcctactggaggaatca 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 accagcgcagccatggtggactaggctaaagatgggaaggattgcctactggaggaatca 389
Query: 912 cattctcgttactatattggctgctttgggtatcgcaccgaagggaaccgtggatgtcca 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cattctcgttactatattggctgctttgggtatcgcaccgaagggaaccgtggatgtcca 329
Query: 972 cgagatgcttttcaaaacagccgatcatttgacacagggcggcgagactggaattttctc 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cgagatgcttttcaaaacagccgatcatttgacacagggcggcgagactggaattttctc 269
Query: 1032 tccgatgcatatggttctctgcagaaaacctgagagcccttcaaattcttaa 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tccgatgcatatggttctctgcagaaaacctgagagcccttcaaattcttaa 217
>gi|262091180|gb|GT228607.1|GT228607 JC172 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
PL02SE.D03.scf 5', mRNA sequence
Length = 526
Score = 571 bits (288), Expect = e-163
Identities = 298/300 (99%), Gaps = 1/300 (0%)
Strand = Plus / Plus
Query: 785 cagacattgccgagacggcgagaaaggtag-ggttcgaagtagtgaaagagaaggattta 843
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 22 cagacattgccgagacggcgagaaaggtagcggttcgaagtagtgaaagagaaggattta 81
Query: 844 gcaaaaccaccagcgcagccatggtggactaggctaaagatgggaaggattgcctactgg 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 gcaaaaccaccagcgcagccatggtggactaggctaaagatgggaaggattgcctactgg 141
Query: 904 aggaatcacattctcgttactatattggctgctttgggtatcgcaccgaagggaaccgtg 963
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 142 aggaatcacattctcgttactatattggctgatttgggtatcgcaccgaagggaaccgtg 201
Query: 964 gatgtccacgagatgcttttcaaaacagccgatcatttgacacagggcggcgagactgga 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gatgtccacgagatgcttttcaaaacagccgatcatttgacacagggcggcgagactgga 261
Query: 1024 attttctctccgatgcatatggttctctgcagaaaacctgagagcccttcaaattcttaa 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attttctctccgatgcatatggttctctgcagaaaacctgagagcccttcaaattcttaa 321
>gi|268519749|gb|FM888216.1|FM888216 FM888216 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001570,
mRNA sequence
Length = 477
Score = 492 bits (248), Expect = e-139
Identities = 330/351 (94%), Gaps = 5/351 (1%)
Strand = Plus / Plus
Query: 111 atccggtggctcgatctcggccgagaaagtccaggataacta-caagcagtactggtcct 169
||||||||||||||| || ||||||||||||||||||||||| || | || ||||||||
Sbjct: 128 atccggtggctcgatatccgccgagaaagtccaggataactaacagncggtcctggtcct 187
Query: 170 tctttcgccgccccaaagaa-atcgaaacggccgagaaagtccccgatttcgtggacaca 228
|||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||
Sbjct: 188 tctttcgccgccccaaagaacatcgaatcggccgacaaagtccccgattccgtggacaca 247
Query: 229 ttctacaacttagtaaccgatatatacgagtggggatggggtcagtcctt-ccacttctc 287
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 248 ttctacaacttagtaaccgatataaacgagtggggatggggtcagtcctttccacttctc 307
Query: 288 tccctctgttcctgg-aaagtcccaccgcgacgcaacgcgcctccatgaagagatggccg 346
||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| |
Sbjct: 308 tccctctgttcctggtaaagtcccacggcgacgcaatgcgcctccatgaagagatggctg 367
Query: 347 tcgatctcatcgatgtgaagcctggagaacgaatcctggacgttggatgcggcgtcgggg 406
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 368 tcgatctcatcgatgtgaagcctggagaaggaatcctggacgttggatgcggcgtcgggg 427
Query: 407 gccccatgcgcgccatcgccgctcactcgcgcgctaatgttgtaggcatca 457
||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 428 gccccatgcgctccatcgccgctcactcgcgcgct-atgttgtaagcatca 477
Score = 172 bits (87), Expect = 5e-43
Identities = 97/99 (97%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 847 aaaccaccagcgcagccatggtggactaggctaaagatgggaaggattgcctactggagg 906
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 aaaccaccagcgca-ccatggtggactaggctaaagatgggaaggattgcctactggagg 73
Query: 907 aatcacattctcgttactatattggctgctttgggtatc 945
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 74 aatcacattctcgttactatattggctgctttggatatc 112
>gi|268520085|gb|FM889933.1|FM889933 FM889933 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003690,
mRNA sequence
Length = 363
Score = 272 bits (137), Expect = 8e-73
Identities = 140/141 (99%)
Strand = Plus / Minus
Query: 943 atcgcaccgaagggaaccgtggatgtccacgagatgcttttcaaaacagccgatcatttg 1002
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atcgcactgaagggaaccgtggatgtccacgagatgcttttcaaaacagccgatcatttg 289
Query: 1003 acacagggcggcgagactggaattttctctccgatgcatatggttctctgcagaaaacct 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 acacagggcggcgagactggaattttctctccgatgcatatggttctctgcagaaaacct 229
Query: 1063 gagagcccttcaaattcttaa 1083
|||||||||||||||||||||
Sbjct: 228 gagagcccttcaaattcttaa 208