Jatropha Genome Database

JcCA0080591.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0080591.30 - phase: 0 
         (804 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525965|gb|FM891221.1|FM891221 FM891221 Jatropha curcas emb...   609   e-174

>gi|268525965|gb|FM891221.1|FM891221 FM891221 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001344,
           mRNA sequence
          Length = 458

 Score =  609 bits (307), Expect = e-174
 Identities = 408/425 (96%), Gaps = 14/425 (3%)
 Strand = Plus / Plus

                                                                       
Query: 384 ttggattggtgtccgcagacatgggcaaggaaattgggaggccatgctcagagacccctc 443
           ||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 9   ttggattggtgtc-gcagacatgggcanagaaattgggaggccatgctcagagacccctc 67

                                                                       
Query: 444 actttctttctccaagcataaaaccatagaagatctatcgcgacggtgggagaaagaaag 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  actttctttctccaagcataaaaccatagaagatctatcgcgacggtgggagaaagaaag 127

                                                                       
Query: 504 gcttaaaatcttgtatc-ctgggaacttaccaattcatggatcaggtaacttaccttccg 562
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gcttaaaatcttgtatcnctgggaacttaccaattcatggatcaggtaacttaccttccg 187

                                                                       
Query: 563 acatgttcaacaactca-gttgactataggaagaagcgtcttaaagcagctgatagtact 621
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 acatgttcaacaactcangttgactataggaagaagcgtcttaaagcagctgatagtact 247

                                                                       
Query: 622 ttaccattt-gttgaggatcagctgccttcat-gtggggaaaagaaagttcagcaaaacc 679
           ||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct: 248 ttaccatttngttgaggatcagctgccttcatngtggggaaaagaaag-tcagc-aaacc 305

                                                                       
Query: 680 ttcttcttggtggattaattaacatttccatgttgagaagagacacagaagagagtgaga 739
           |||||| ||||||||| |||||||||||||||||||||||||  || |||||||||||||
Sbjct: 306 ttcttc-tggtggatt-attaacatttccatgttgagaagag--accgaagagagtgaga 361

                                                                       
Query: 740 aatcgaaccagactcaacagcttaaagcaaaagaattttcttcagaagacaccatttctg 799
           ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 362 aatcgaaccagactc-acagcttaaagc-aaagaa-tttcttcagaagacaccatttctg 418

                
Query: 800 attag 804
           |||||
Sbjct: 419 attag 423