Jatropha Genome Database

JcCA0078491.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0078491.20 - phase: 0 
         (666 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522287|gb|FM894432.1|FM894432 FM894432 Jatropha curcas emb...   351   6e-97
gi|268522693|gb|FM896136.1|FM896136 FM896136 Jatropha curcas emb...   262   5e-70

>gi|268522287|gb|FM894432.1|FM894432 FM894432 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004781,
           mRNA sequence
          Length = 588

 Score =  351 bits (177), Expect = 6e-97
 Identities = 177/177 (100%)
 Strand = Plus / Plus

                                                                       
Query: 480 ctgcactggaactgctagaatcattgatcatcaacgactgagcagctctggatatacgtt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctgcactggaactgctagaatcattgatcatcaacgactgagcagctctggatatacgtt 60

                                                                       
Query: 540 ttcagcgtctttacctccatatcttgccagtgctgcaattactgctattgatgtcataga 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttcagcgtctttacctccatatcttgccagtgctgcaattactgctattgatgtcataga 120

                                                                    
Query: 600 agataatcctgctttagtaaccaagctgaaagaaaacattgctgtattatggaaagg 656
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agataatcctgctttagtaaccaagctgaaagaaaacattgctgtattatggaaagg 177


>gi|268522693|gb|FM896136.1|FM896136 FM896136 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003294,
           mRNA sequence
          Length = 536

 Score =  262 bits (132), Expect = 5e-70
 Identities = 139/140 (99%), Gaps = 1/140 (0%)
 Strand = Plus / Plus

                                                                       
Query: 518 tgagcagctctgg-atatacgttttcagcgtctttacctccatatcttgccagtgctgca 576
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgagcagctctgggatatacgttttcagcgtctttacctccatatcttgccagtgctgca 60

                                                                       
Query: 577 attactgctattgatgtcatagaagataatcctgctttagtaaccaagctgaaagaaaac 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attactgctattgatgtcatagaagataatcctgctttagtaaccaagctgaaagaaaac 120

                               
Query: 637 attgctgtattatggaaagg 656
           ||||||||||||||||||||
Sbjct: 121 attgctgtattatggaaagg 140