Jatropha Genome Database

JcCA0076481.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0076481.10 + phase: 0 
         (828 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524744|gb|FM895442.1|FM895442 FM895442 Jatropha curcas emb...   741   0.0  

>gi|268524744|gb|FM895442.1|FM895442 FM895442 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002364,
           mRNA sequence
          Length = 471

 Score =  741 bits (374), Expect = 0.0
 Identities = 408/418 (97%), Gaps = 1/418 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcatcgaatatagggatgatggatagtgcatattttgttggaaggaatgagatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  atggcatcgaatatagggatgatggatagtgcatattttgttggaaggaatgagatttta 113

                                                                       
Query: 61  acctg-gatcaacaataggcttcagctcaacctcactcgcatcgaagaggctgcatccgg 119
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 acctgngatcaacaataggcttcagctcaacctcactcgcatcgaagaggctgcatccgg 173

                                                                       
Query: 120 tgccgtgcaatgtcagatgatggacatgacctatccaggagttgttcccatgcacaaggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tgccgtgcaatgtcagatgatggacatgacctatccaggagttgttcccatgcacaaggt 233

                                                                       
Query: 180 gaattttgatgcgaagacagaatatgatatgatccaaaattacaaggttttacaggaggt 239
           |||||||||||| ||||  |||||||||||||||||||||||||| ||||||  ||||||
Sbjct: 234 gaattttgatgccaagaacgaatatgatatgatccaaaattacaaagttttaacggaggt 293

                                                                       
Query: 240 gttcaacaagttgaaaattgaaaagcatattgaagttaacaggcttgttaaaggccgacc 299
           |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 294 gttccacaagttgaaaattgaaaagcatattgaagttaccaggcttgtttaaggccgacc 353

                                                                       
Query: 300 tttagacaacttggagttcttacaatggttgaagcgatactgtgattccatcaatggtgg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tttagacaacttggagttcttacaatggttgaagcgatactgtgattccatcaatggtgg 413

                                                                     
Query: 360 catcatgaatgagaattataaccctgtggaacggagaattaagggtggaaaggaccgt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 catcatgaatgagaattataaccctgtggaacggagaattaagggtggaaaggaccgt 471