Jatropha Genome Database

JcCA0076121.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0076121.10 + phase: 0 /pseudo/partial
         (435 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517599|gb|FM889310.1|FM889310 FM889310 Jatropha curcas emb...   613   e-176

>gi|268517599|gb|FM889310.1|FM889310 FM889310 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002941,
           mRNA sequence
          Length = 468

 Score =  613 bits (309), Expect = e-176
 Identities = 333/342 (97%), Gaps = 8/342 (2%)
 Strand = Plus / Plus

                                                                       
Query: 102 aggttcatattaagagtgctgccagttgaagttgcatgctatgcttctgaagaggaaatt 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aggttcatattaagagtgctgccagttgaagttgcatgctatgcttctgaagaggaaatt 183

                                                                       
Query: 162 tcaaaagcaatggcatcaattgtggcaaagtattttcctgtggatgctcaagacccgcaa 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcaaaagcaatggcatcaattgtggcaaagtattttcctgtggatgctcaagacccgcaa 243

                                                                       
Query: 222 aag--------actgtatgaagctcgtgcaaacactggaattgacaggatgaaaattata 273
           |||        |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aagtttgcagtactgtatgaagctcgtgcaaacactggaattgacaggatgaaaattata 303

                                                                       
Query: 274 aattcagtggcaaaatctgttcctggaccgcataaagtcgatcttagcaatcctgagaag 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aattcagtggcaaaatctgttcctggaccgcataaagtcgatcttagcaatcctgagaag 363

                                                                       
Query: 334 acaattgtagttgaagttgttaagactgtatgcttgattggggttgttgagaagtacaag 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acaattgtagttgaagttgttaagactgtatgcttgattggggttgttgagaagtacaag 423

                                                     
Query: 394 gagttggccaagtacaacatgaggcagctcacatcaccaaaa 435
           |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 424 gagtaggccaagtacaacatgaggcagctcacatcaccaaaa 465