Jatropha Genome Database

JcCA0075421.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075421.20 - phase: 0 /pseudo
         (1914 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520280|gb|FM890128.1|FM890128 FM890128 Jatropha curcas emb...   700   0.0  

>gi|268520280|gb|FM890128.1|FM890128 FM890128 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003929,
            mRNA sequence
          Length = 530

 Score =  700 bits (353), Expect = 0.0
 Identities = 353/353 (100%)
 Strand = Plus / Plus

                                                                        
Query: 935  aggtttccaaagtttcaactgataggaggtcatggaagaggtgtgcggctcatggttaca 994
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50   aggtttccaaagtttcaactgataggaggtcatggaagaggtgtgcggctcatggttaca 109

                                                                        
Query: 995  taagccatctcatccgggctttgcagacgtctgatggcaaagaaagcttgccagtgcctc 1054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110  taagccatctcatccgggctttgcagacgtctgatggcaaagaaagcttgccagtgcctc 169

                                                                        
Query: 1055 agaaccaactgagacctcatgaaattctaaagcaaggcgtactcatgacaataaatgact 1114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170  agaaccaactgagacctcatgaaattctaaagcaaggcgtactcatgacaataaatgact 229

                                                                        
Query: 1115 tcaatcggagcaggactgatttaagtggaattacatctgctgctagcacaatagttaatc 1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230  tcaatcggagcaggactgatttaagtggaattacatctgctgctagcacaatagttaatc 289

                                                                        
Query: 1175 cagtcgagaaaaattccaacgacaataaaattggtattcttcaacacctaaggccacacc 1234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290  cagtcgagaaaaattccaacgacaataaaattggtattcttcaacacctaaggccacacc 349

                                                                 
Query: 1235 aagataattcaccggcagctctggcatccgggatgtatacctcccataagcag 1287
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350  aagataattcaccggcagctctggcatccgggatgtatacctcccataagcag 402



 Score =  111 bits (56), Expect = 3e-24
 Identities = 59/60 (98%)
 Strand = Plus / Plus

                                                                        
Query: 1284 gcagagtttcaatttcttgtctctcacagctggaggtggagggatggaacctaatagcag 1343
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 471  gcagagtttcaatttcttgtctctcacagctggaagtggagggatggaacctaatagcag 530