Jatropha Genome Database

JcCA0075421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075421.10 + phase: 0 
         (300 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262090947|gb|GT229305.1|GT229305 JC870 Jatropha seeds from fr...   488   e-138

>gi|262090947|gb|GT229305.1|GT229305 JC870 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL21SE.D07.scf 5', mRNA sequence
          Length = 531

 Score =  488 bits (246), Expect = e-138
 Identities = 277/282 (98%), Gaps = 4/282 (1%)
 Strand = Plus / Minus

                                                                       
Query: 23  agttccgaacacacaaggtcatctacaggcgatatgctggattatttttctcgctgtgtg 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 agttccgaacacacaaggtcatctacaggcgatatgctggattatttttctcgctgtgtg 420

                                                                       
Query: 83  ttgatataacggataatgaattggcatatttagagtgcatccatttatttgtggag-ata 141
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 419 ttgatataacggataatgaattggcatatttagagtgcatccatttatttgtggagaata 360

                                                                       
Query: 142 ttgg-atcatttcttcagcaacgtgtgtgagctaga-tttggtatttaactttcacaagg 199
           |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 359 ttggaatcatttcttcagcaacgtgtgtgagctagattttggtattaaactttcacaagg 300

                                                                       
Query: 200 -tttatctgatactcgatgaattcattcttgctggggagctccaagaaacaagcaagaag 258
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttttatctgatactcgatgaattcattcttgctggggagctccaagaaacaagcaagaag 240

                                                     
Query: 259 gcgatcatagagagaatgggagaattggagaagctcgagtga 300
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gcgatcatagagagaatgggagaattggagaagctcgagtga 198