Jatropha Genome Database

JcCA0075411.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0075411.40 - phase: 2 /partial
         (180 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518427|gb|FM888701.1|FM888701 FM888701 Jatropha curcas emb...    94   6e-20
gi|268517648|gb|FM893617.1|FM893617 FM893617 Jatropha curcas emb...    84   6e-17

>gi|268518427|gb|FM888701.1|FM888701 FM888701 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002159,
           mRNA sequence
          Length = 311

 Score = 93.7 bits (47), Expect = 6e-20
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                       
Query: 118 aaagaaccagagggcagctagcaagaaggcttctggtggagatggagacgaagaggatga 177
           ||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 309 aaagaaccagagttcagctagcaagaatgcttctggtggagatggagacgaagaggagga 250

              
Query: 178 gga 180
           |||
Sbjct: 249 gga 247


>gi|268517648|gb|FM893617.1|FM893617 FM893617 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004507,
           mRNA sequence
          Length = 551

 Score = 83.8 bits (42), Expect = 6e-17
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                       
Query: 20  aatatcccatcttttatggtgagggttgattcacaaaagcacattgatttctctttgaca 79
           ||||| || ||||||||||||||||||||||| || || ||||||||||||||  | |||
Sbjct: 474 aatattccctcttttatggtgagggttgattcgcagaaacacattgatttctcactcaca 533

                         
Query: 80  agtccattcggtgg 93
           ||||||||||||||
Sbjct: 534 agtccattcggtgg 547