Jatropha Genome Database

JcCA0074951.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0074951.10 + phase: 2 /pseudo
         (454 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523503|gb|FM893826.1|FM893826 FM893826 Jatropha curcas emb...   609   e-174

>gi|268523503|gb|FM893826.1|FM893826 FM893826 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004754,
           mRNA sequence
          Length = 510

 Score =  609 bits (307), Expect = e-174
 Identities = 355/376 (94%), Gaps = 20/376 (5%)
 Strand = Plus / Minus

                                                                       
Query: 99  tctctcgagtgaatcactgctaatgggtgtaacaaagtgcatgtgttttggaagaccatt 158
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 510 tctctcgagtgaatcactgctaatgggtgtaaccaagtgcatgtgttttggaagaccatt 451

                                                                       
Query: 159 agctccaggtggaaatcgagcatggtctataatatattttgtctcatcatg--------- 209
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 450 agctccaggtggaaatcgagcatggtctataatatattttgtctcatcatggttgacttt 391

                                                                       
Query: 210 -----------aagcatgtctacttgcaggtgcaacaaaaaatgcataccacaccaagta 258
                      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tctggttgcagaagcatgtctacttgcaggtgcaacaaaaaatgcataccacaccaagta 331

                                                                       
Query: 259 caggggaatgatatatgctcaaaatttctcatgtgaaacattgcgtaagggtgtttttgt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 caggggaatgatatatgctcaaaatttctcatgtgaaacattgcgtaagggtgtttttgt 271

                                                                       
Query: 319 tgctggagctgtgtttgtagttgcaacaatgattcttaatgtatactactacatgtattt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgctggagctgtgtttgtagttgcaacaatgattcttaatgtatactactacatgtattt 211

                                                                       
Query: 379 ctccaaggctactgcccctcaggcagccagcaaggcaaatcgtactagttcgaatgtcgg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ctccaaggctactgcccctcaggcagccagcaaggcaaatcgtactagttcgaatgtcgg 151

                           
Query: 439 gatggctgggtatgca 454
           ||||||||||||||||
Sbjct: 150 gatggctgggtatgca 135