Jatropha Genome Database
- JcCA0074421.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0074421.20 - phase: 0 /partial
(393 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|262091138|gb|GT228565.1|GT228565 JC130 Jatropha seeds from fr... 280 1e-75
gi|268525461|gb|FM896103.1|FM896103 FM896103 Jatropha curcas emb... 236 2e-62
gi|268520988|gb|FM891707.1|FM891707 FM891707 Jatropha curcas emb... 168 3e-42
>gi|262091138|gb|GT228565.1|GT228565 JC130 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone Contig132 5', mRNA sequence
Length = 530
Score = 280 bits (141), Expect = 1e-75
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 253 ggtcaagatgtcaaagtgttgacagataatggcaagtcatttacatgcaccttacgtttt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 ggtcaagatgtcaaagtgttgacagataatggcaagtcatttacatgcaccttacgtttt 102
Query: 313 gatacagaggtggaactggcatattttgatcatggaggtatcttgcaatatgtcatcagg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 gatacagaggtggaactggcatattttgatcatggaggtatcttgcaatatgtcatcagg 162
Query: 373 aacctgattcatgcaaaacat 393
|||||||||||||||||||||
Sbjct: 163 aacctgattcatgcaaaacat 183
>gi|268525461|gb|FM896103.1|FM896103 FM896103 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003251,
mRNA sequence
Length = 444
Score = 236 bits (119), Expect = 2e-62
Identities = 126/127 (99%), Gaps = 1/127 (0%)
Strand = Plus / Minus
Query: 268 gtgttgacagataatggcaagtcatttacatgcaccttacgttttgatacagaggtggaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgttgacagataatggcaagtcatttacatgcaccttacgttttgatacagaggtggaa 385
Query: 328 ctggcatattttgatcatggaggtatcttgcaatatgtcatc-aggaacctgattcatgc 386
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 ctggcatattttgatcatggaggtatcttgcaatatgtcatctaggaacctgattcatgc 325
Query: 387 aaaacat 393
|||||||
Sbjct: 324 aaaacat 318
>gi|268520988|gb|FM891707.1|FM891707 FM891707 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002096,
mRNA sequence
Length = 550
Score = 168 bits (85), Expect = 3e-42
Identities = 170/197 (86%), Gaps = 1/197 (0%)
Strand = Plus / Plus
Query: 10 tcttggctggtgccgagtatgggagtggaagttctcgtgattgggctagccaagggtcca 69
|||||||||| ||||||||||| |||||||| || | ||||||||| ||||||||||||
Sbjct: 276 tcttggctggagccgagtatggaagtggaagctccagagattgggct-gccaagggtcca 334
Query: 70 atgctattgggtgtaaaagcagtgatagcaaagagctttgagagaattcatcgtagtaat 129
||||||||||| || ||||| ||||| || || || |||||||||||||| || ||||||
Sbjct: 335 atgctattgggagttaaagcggtgattgctaaaagttttgagagaattcaccgcagtaat 394
Query: 130 ttggtcggcatgggtattattccattatgtttcaagactggtgaggatgctgatacactt 189
||||| || ||||| ||||||||| | ||||||||| ||||| ||||||| ||||||||
Sbjct: 395 ttggtgggaatgggaattattccactttgtttcaaggctggtcaggatgcagatacacta 454
Query: 190 ggattgactggccatga 206
|| |||||||| |||||
Sbjct: 455 gggttgactggtcatga 471