Jatropha Genome Database

JcCA0074421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0074421.10 + phase: 1 /pseudo/partial
         (375 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524802|gb|FM895500.1|FM895500 FM895500 Jatropha curcas emb...   103   1e-22
gi|268524786|gb|FM895484.1|FM895484 FM895484 Jatropha curcas emb...    90   2e-18
gi|268524604|gb|FM895302.1|FM895302 FM895302 Jatropha curcas emb...    70   2e-12

>gi|268524802|gb|FM895500.1|FM895500 FM895500 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002431,
           mRNA sequence
          Length = 541

 Score =  103 bits (52), Expect = 1e-22
 Identities = 142/172 (82%)
 Strand = Plus / Minus

                                                                       
Query: 184 tggtggaatgagctgtctgaatgtggaaaaggagggctttctgttaaaccgaagaggggc 243
           |||||||||||| |||| |||||||| ||| | || ||||| || |||||||||| ||||
Sbjct: 460 tggtggaatgagttgtcagaatgtggcaaacggggtctttcagtgaaaccgaagatgggc 401

                                                                       
Query: 244 gatgcattgcttttctggagtatgaaacctgacgcctctctggatccttcaagtttacat 303
            |||||||||| |||||||| |  |  ||||| ||  | || || ||||||||||| |||
Sbjct: 400 aatgcattgctgttctggagcacaaggcctgatgctacactagacccttcaagtttgcat 341

                                                               
Query: 304 ggtggttgcgctgtgattaaagggaataagtggtcagctaccaagtggatgc 355
           ||| ||||| |||| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 340 ggtagttgccctgtaattagaggaaacaagtggtcagctacaaagtggatgc 289


>gi|268524786|gb|FM895484.1|FM895484 FM895484 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002413,
           mRNA sequence
          Length = 562

 Score = 89.7 bits (45), Expect = 2e-18
 Identities = 135/165 (81%)
 Strand = Plus / Minus

                                                                       
Query: 191 atgagctgtctgaatgtggaaaaggagggctttctgttaaaccgaagaggggcgatgcat 250
           ||||| |||| |||||||| ||| | || ||||| || |||||||||| |||| ||||||
Sbjct: 544 atgagttgtcagaatgtggcaaacggggtctttcagtgaaaccgaagatgggcaatgcat 485

                                                                       
Query: 251 tgcttttctggagtatgaaacctgacgcctctctggatccttcaagtttacatggtggtt 310
           |||| |||||||| |  |  ||||| ||  | || || ||||||||||| |||||| |||
Sbjct: 484 tgctgttctggagcacaaggcctgatgctacactagacccttcaagtttgcatggtagtt 425

                                                        
Query: 311 gcgctgtgattaaagggaataagtggtcagctaccaagtggatgc 355
           || |||| |||| ||| || |||||||||||||| ||||||||||
Sbjct: 424 gccctgtaattagaggaaacaagtggtcagctacaaagtggatgc 380


>gi|268524604|gb|FM895302.1|FM895302 FM895302 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002108,
           mRNA sequence
          Length = 159

 Score = 69.9 bits (35), Expect = 2e-12
 Identities = 42/43 (97%), Gaps = 1/43 (2%)
 Strand = Plus / Plus

                                                      
Query: 333 gtggtcagctaccaagtggatgcgtgtgaatgagtatcaagcc 375
           |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1   gtggtcagctac-aagtggatgcgtgtgaatgagtatcaagcc 42