Jatropha Genome Database
- JcCA0073421.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0073421.10 - phase: 0 /pseudo/partial
(1992 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268523140|gb|FM894723.1|FM894723 FM894723 Jatropha curcas emb... 1183 0.0
gi|268521718|gb|FM894314.1|FM894314 FM894314 Jatropha curcas emb... 1063 0.0
gi|268523129|gb|FM894712.1|FM894712 FM894712 Jatropha curcas emb... 496 e-140
gi|268517317|gb|FM887259.1|FM887259 FM887259 Jatropha curcas emb... 206 7e-53
gi|268516605|gb|FM887084.1|FM887084 FM887084 Jatropha curcas emb... 135 2e-31
gi|262091167|gb|GT228594.1|GT228594 JC159 Jatropha seeds from fr... 119 1e-26
gi|268522428|gb|FM894573.1|FM894573 FM894573 Jatropha curcas emb... 107 5e-23
>gi|268523140|gb|FM894723.1|FM894723 FM894723 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000567,
mRNA sequence
Length = 605
Score = 1183 bits (597), Expect = 0.0
Identities = 600/601 (99%)
Strand = Plus / Plus
Query: 820 agaaaatatgacgacaagtaccattttgcaagtcagtttacagctgatcttattgcaatg 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agaaaatatgacgacaagtaccattttgcaagtcagtttacagctgatcttattgcaatg 64
Query: 880 aacaatgcagattttattatcactagtacgtaccaggagattgcaggaagcaagactaat 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aacaatgcagattttattatcactagtacgtaccaggagattgcaggaagcaagactaat 124
Query: 940 gttggacagtatgagagccatactgcttttactcttcctgggctgtatcgagttgttcat 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gttggacagtatgagagccatactgcttttactcttcctgggctgtatcgagttgttcat 184
Query: 1000 ggtattgacgtttttgatcccaagtttaatatagtctctccgggagcagatatgtgcata 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggtattgacgtttttgatcccaagtttaatatagtctctccgggagcagatatgtgcata 244
Query: 1060 tattttccatactccgaaagggaaagaagacttactgctttacatggttcaattgaagaa 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tattttccatactccgaaagggaaagaagacttactgctttacatggttcaattgaagaa 304
Query: 1120 ctcttatatgatcctgagcagaatgaggagcatgtaggttttttaacagaccaatcaaag 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctcttatatgatcctgagcagaatgaggagcatgtaggttttttaacagaccaatcaaag 364
Query: 1180 cccatcatcttttccatggcaagacttgatagggtgaagaacctgacaggacttgttgag 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cccatcatcttttccatggcaagacttgatagggtgaagaacctgacaggacttgttgag 424
Query: 1240 tgctatggtagaagcagccagctaagagaacttgtgaatcttgttgtggttggtgggtac 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgctatggtagaagcagccagctaagagaacttgtgaatcttgttgtggttggtgggtac 484
Query: 1300 ataaatgtgaagcaatccagggatagagaagaaatggcagagattgaaaagatgcatgcc 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ataaatgtgaagcaatccagggatagagaagaaatggcagagattgaaaagatgcatgcc 544
Query: 1360 ctcataaagcagtatgatctgcatggccagtttcgctggatagctgcccaaatgaaccgt 1419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctcatcaagcagtatgatctgcatggccagtttcgctggatagctgcccaaatgaaccgt 604
Query: 1420 g 1420
|
Sbjct: 605 g 605
>gi|268521718|gb|FM894314.1|FM894314 FM894314 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004634,
mRNA sequence
Length = 551
Score = 1063 bits (536), Expect = 0.0
Identities = 545/548 (99%)
Strand = Plus / Plus
Query: 609 gtttgatgtgtggccattcttggagacctttgcagatgatgcatcaaatgaaattgctgc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtttgatgtgtggccattcttggagacctttgcagatgatgcatcaaatgaaattgctgc 60
Query: 669 cgaattacaaggagttccagatcttattattggaaattatagtgatggaaatcttgttgc 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaattacaaggagttccagatcttattattggaaattatagtgatggaaatcttgttgc 120
Query: 729 ttctttgttgtcttataagctaggaattacgcagtgcaacattgcgcatgcattggagaa 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttctttgttgtcttataagctaggaattacgcagtgcaacattgcgcatgcattggagaa 180
Query: 789 aataaagtatccggattctgatatatactggagaaaatatgacgacaagtaccattttgc 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aataaagtatccggattctgatatatactggagaaaatatgacgacaagtaccattttgc 240
Query: 849 aagtcagtttacagctgatcttattgcaatgaacaatgcagattttattatcactagtac 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagtcagtttacagctgatcttattgcaatgaacaatgcagattttattatcactagtac 300
Query: 909 gtaccaggagattgcaggaagcaagactaatgttggacagtatgagagccatactgcttt 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtaccaggagattgcaggaagcaagactaatgttggacagtatgagagccatactgcttt 360
Query: 969 tactcttcctgggctgtatcgagttgttcatggtattgacgtttttgatcccaagtttaa 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tactcttcctgggctgtatcgagttgttcatggtattgacgtttttgatcccaagtttaa 420
Query: 1029 tatagtctctccgggagcagatatgtgcatatattttccatactccgaaagggaaagaag 1088
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 421 tatagtctctccgggagcagatatgtgcatatgttttccatactccgaaagggaaagaag 480
Query: 1089 acttactgctttacatggttcaattgaagaactcttatatgatcctgagcagaatgagga 1148
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 481 acttactgctttacatggttcaagtgaagaactcttatatgatcctgagcagaatgacga 540
Query: 1149 gcatgtag 1156
||||||||
Sbjct: 541 gcatgtag 548
>gi|268523129|gb|FM894712.1|FM894712 FM894712 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000549,
mRNA sequence
Length = 275
Score = 496 bits (250), Expect = e-140
Identities = 250/250 (100%)
Strand = Plus / Plus
Query: 729 ttctttgttgtcttataagctaggaattacgcagtgcaacattgcgcatgcattggagaa 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 ttctttgttgtcttataagctaggaattacgcagtgcaacattgcgcatgcattggagaa 85
Query: 789 aataaagtatccggattctgatatatactggagaaaatatgacgacaagtaccattttgc 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aataaagtatccggattctgatatatactggagaaaatatgacgacaagtaccattttgc 145
Query: 849 aagtcagtttacagctgatcttattgcaatgaacaatgcagattttattatcactagtac 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 aagtcagtttacagctgatcttattgcaatgaacaatgcagattttattatcactagtac 205
Query: 909 gtaccaggagattgcaggaagcaagactaatgttggacagtatgagagccatactgcttt 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gtaccaggagattgcaggaagcaagactaatgttggacagtatgagagccatactgcttt 265
Query: 969 tactcttcct 978
||||||||||
Sbjct: 266 tactcttcct 275
>gi|268517317|gb|FM887259.1|FM887259 FM887259 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000417,
mRNA sequence
Length = 261
Score = 206 bits (104), Expect = 7e-53
Identities = 121/127 (95%), Gaps = 6/127 (4%)
Strand = Plus / Plus
Query: 1832 ctgagaggttgctgacattagctggag------tttatggcttctggaagcatgtgtcta 1885
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctgagaggttgctgacattagctggagaaacaatttatggcttctggaagcatgtgtcta 60
Query: 1886 agcttgagaggagagagataaggcgatacttggagatgttttatgttctcaagtttcgca 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agcttgagaggagagagataaggcgatacttggagatgttttatgttctcaagtttcgca 120
Query: 1946 atctggt 1952
|||||||
Sbjct: 121 atctggt 127
>gi|268516605|gb|FM887084.1|FM887084 FM887084 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000164,
mRNA sequence
Length = 249
Score = 135 bits (68), Expect = 2e-31
Identities = 82/84 (97%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 1871 ggaagcatgtgtctaagcttga-gaggagagagataaggcgatacttgg-agatgtttta 1928
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 32 ggaagcatgtgtctaagcttgaagaggagagagataaggcgatacttggcagatgtttta 91
Query: 1929 tgttctcaagtttcgcaatctggt 1952
||||||||||||||||||||||||
Sbjct: 92 tgttctcaagtttcgcaatctggt 115
>gi|262091167|gb|GT228594.1|GT228594 JC159 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
PL01SE.A01.scf 5', mRNA sequence
Length = 580
Score = 119 bits (60), Expect = 1e-26
Identities = 156/188 (82%)
Strand = Plus / Plus
Query: 835 aagtaccattttgcaagtcagtttacagctgatcttattgcaatgaacaatgcagatttt 894
||||||||||| || |||||||||||||||||||| |||| ||||| || |||||||
Sbjct: 51 aagtaccatttctcatgtcagtttacagctgatctttttgccatgaatcatacagatttc 110
Query: 895 attatcactagtacgtaccaggagattgcaggaagcaagactaatgttggacagtatgag 954
|| ||||| ||||| | ||| || ||||| ||||||||| | |||||| || ||||||
Sbjct: 111 atcatcaccagtacattccaagaaattgctggaagcaaggacactgttggtcaatatgag 170
Query: 955 agccatactgcttttactcttcctgggctgtatcgagttgttcatggtattgacgttttt 1014
||||| || ||||| || ||||||||||| || |||| |||||||||||||| || |||
Sbjct: 171 agccacacagctttcacccttcctgggctctacagagtcgttcatggtattgatgtgttt 230
Query: 1015 gatcccaa 1022
||||||||
Sbjct: 231 gatcccaa 238
>gi|268522428|gb|FM894573.1|FM894573 FM894573 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000362,
mRNA sequence
Length = 521
Score = 107 bits (54), Expect = 5e-23
Identities = 132/158 (83%)
Strand = Plus / Plus
Query: 1426 aatggtgagctctatcggtacattgctgatgcaaaaggtgcttttgtacagcctgctttc 1485
||||| || ||||||||||||||| ||| |||| || | |||||| |||||||||||
Sbjct: 209 aatggggaactctatcggtacatttgtgacacaaagggagtttttgtgcagcctgcttta 268
Query: 1486 tatgaagcttttggcctcactgttgtggaagccatgacttctggacttcctacttttgcc 1545
||||||||||||||| | |||||||| || |||||||||| ||| | || |||||||||
Sbjct: 269 tatgaagcttttggcttgactgttgttgaggccatgacttgtggtttgccaacttttgcc 328
Query: 1546 acttgtcacggtggtcctgctgagatcattgagcatgg 1583
|| || | ||||| |||||||||||||||| ||||||
Sbjct: 329 acatgcaatggtggccctgctgagatcattgtgcatgg 366