Jatropha Genome Database

JcCA0070381.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0070381.30 - phase: 1 /TE
         (656 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas emb...   559   e-159

>gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895,
           mRNA sequence
          Length = 495

 Score =  559 bits (282), Expect = e-159
 Identities = 408/448 (91%), Gaps = 13/448 (2%)
 Strand = Plus / Plus

                                                                       
Query: 211 gctctatgtggttgatatgttgattgttggtcagaattactagcttgaagaaacagctaa 270
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7   gctctatgtggttgatatattgattgttggtcagaatt-ctagcttgaagaaacagctaa 65

                                                                       
Query: 271 gtaagtcttttgctatgaaagacttgggaccagcaaaacagattcttggcatgaagatta 330
           ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||  
Sbjct: 66  gtaagtcttttgctatgaaagacttgggaccagcaaagcaaattcttggcataaagat-- 123

                                                                       
Query: 331 caaggaatcaaagagccaagaaattatggttgtcanaggagaagtacattgagaaagtac 390
                   ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 124 --------caaagagccaagaaattatggttgtcacaggagaagtacattgagaaagtac 175

                                                                       
Query: 391 ttcaaaggtttagaatggagaacgcaaaagcggttagttg-cctcttactaatcacttta 449
           ||||||||||||||||||| ||||| ||||| |||||||  ||||||| |||| ||||||
Sbjct: 176 ttcaaaggtttagaatggaaaacgctaaagctgttagttatcctcttaataataacttta 235

                                                                       
Query: 450 aattaagttctaaacagtgcccttctacggatggagagaaggaagaat-ggaaaagattc 508
           |||| ||||||||| |||| ||||||| |||||||||||||||||||  |||||||||||
Sbjct: 236 aattgagttctaaatagtgtccttctagggatggagagaaggaagaaaaggaaaagattc 295

                                                                       
Query: 509 catatgcttcagcagttagaagcttgatgaatgccatggtttgtacacggccagatattg 568
           |||||||||||||||||  |||||||||||||  |||| ||||||||| || ||||||||
Sbjct: 296 catatgcttcagcagttgaaagcttgatgaatatcatgatttgtacacagctagatattg 355

                                                                       
Query: 569 ctcactcagttggagtagtgagtcggtttctttcaaatcctggaaaggaacattggactg 628
           ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 356 ctcactcagttagagtagtgagtcggtttctttcaaatcctagaaagaaacattggactg 415

                                       
Query: 629 cagtgaaatggattttcaggatatccaa 656
           |||||||||||||||||| |||||||||
Sbjct: 416 cagtgaaatggattttcatgatatccaa 443