Jatropha Genome Database
- JcCA0068741.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0068741.10 - phase: 2 /partial
(1999 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268525116|gb|FM895758.1|FM895758 FM895758 Jatropha curcas emb... 1132 0.0
gi|268518231|gb|FM888505.1|FM888505 FM888505 Jatropha curcas emb... 737 0.0
gi|268524100|gb|FM894779.1|FM894779 FM894779 Jatropha curcas emb... 563 e-160
gi|268517444|gb|FM889162.1|FM889162 FM889162 Jatropha curcas emb... 426 e-119
gi|262090819|gb|GT229177.1|GT229177 JC742 Jatropha seeds from fr... 232 1e-60
>gi|268525116|gb|FM895758.1|FM895758 FM895758 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002738,
mRNA sequence
Length = 592
Score = 1132 bits (571), Expect = 0.0
Identities = 588/591 (99%), Gaps = 2/591 (0%)
Strand = Plus / Plus
Query: 63 cggccatcccaaaaccctccgctcctccttctttctcatccagatcgcctattggcattt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cggccatcccaaaaccctccgctcctccttctttctcatccagatcgcctattggcattt 63
Query: 123 ctagattcaacccctcattttttctgaatctccaaaagtccatacctcaacgctctctct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctagattcaacccctcattttttctgaatctccaaaagtccatacctcaacgctctctct 123
Query: 183 acatttccaactctatatctaaacctactacccctgctccttctagcacttccatacctg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 acatttccaactctatatctaaacctactacccctgctccttctagcacttccatacctg 183
Query: 243 aagcttctcctcctagatttgccactgatgaacctcgaaaaggagctgacatcctcgtcg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aagcttctcctcctagatttgccactgatgaacctcgaaaaggagctgacatcctcgtcg 243
Query: 303 aagcgctcgagcgccaaggggttactgacgtgttcgcttatcctggcggcgcatccatgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aagcgctcgagcgccaaggggttactgacgtgttcgcttatcctggcggcgcatccatgg 303
Query: 363 agatccaccaagccctaactcgctctccaataatacgtaatgtccttcctcgccatgagc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agatccaccaagccctaactcgctctccaataatacgtaatgtccttcctcgccatgagc 363
Query: 423 aaggtggagtcttcgctgctgagggatacgcgcgcgcttcgggcaagcctggtgtctgca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaggtggagtcttcgctgctgagggatacgcgcgcgcttcgggcaagcctggtgtctgca 423
Query: 483 tcgccacctctggacctggcgccaccaatctcgttagcggcttagctgatgctctcctcg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcgccacctctggacctggcgccaccaatctcgttagcggcttagctgatgctctcctcg 483
Query: 543 atagtgtccccattgtggctatcactggccaagtccctcgccgcatgattggtactgatg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atagtgtccccattgtggctatcactggccaagtccctcgccgcatgattggtactgatg 543
Query: 603 catttcaggagactcctattgtcgaggtaactcggtcgataactaagcaca 653
| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 544 c-cttcaggagactccta-tgtcgaggtaactcggtcgataactaagcaca 592
>gi|268518231|gb|FM888505.1|FM888505 FM888505 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001931,
mRNA sequence
Length = 576
Score = 737 bits (372), Expect = 0.0
Identities = 385/388 (99%), Gaps = 1/388 (0%)
Strand = Plus / Minus
Query: 1613 atcatgaatgttcaggagttggcaactgttcgcgtggagaatctaccaatcaaaataatg 1672
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 atcatgaatgttcaggatttggcaactgttcgcgtggagaatctaccaatcaaaataatg 517
Query: 1673 cttctgaacaatcagcatttgggaatggtggtgcaatgggaggatcggttctacaaggca 1732
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 516 cttctgaacaatcagcatttgggaatggtggtgcaatgggagtatcggttctacaaggca 457
Query: 1733 aatagagctcatacttatttaggggatccatcaagagagactgagattttccccaatatg 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aatagagctcatacttatttaggggatccatcaagagagactgagattttccccaatatg 397
Query: 1793 ttgaagtttgctgaagcttgtggaa-tacctgctgcccgtgtgacaaggaaaaaggatct 1851
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 396 ttgaagtttgctgaagcttgtggaattacctgctgcccgtgtgacaaggaaaaaggatct 337
Query: 1852 tagagaagcaatcaaaacaatgttagatactccgggaccatatttgttggatgtgattgt 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tagagaagcaatcaaaacaatgttagatactccgggaccatatttgttggatgtgattgt 277
Query: 1912 gccccatcaagagcatgttttgcccatgatcccaagtggtggagcttttaaagatgtgat 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gccccatcaagagcatgttttgcccatgatcccaagtggtggagcttttaaagatgtgat 217
Query: 1972 aacagaaggtgatggaagaacaaagtac 1999
||||||||||||||||||||||||||||
Sbjct: 216 aacagaaggtgatggaagaacaaagtac 189
>gi|268524100|gb|FM894779.1|FM894779 FM894779 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000648,
mRNA sequence
Length = 489
Score = 563 bits (284), Expect = e-160
Identities = 293/296 (98%)
Strand = Plus / Minus
Query: 1704 tgcaatgggaggatcggttctacaaggcaaatagagctcatacttatttaggggatccat 1763
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgcaatgggaggatcggttttacaaggcaaatagagctcatacttatttaggggatccat 430
Query: 1764 caagagagactgagattttccccaatatgttgaagtttgctgaagcttgtggaatacctg 1823
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 429 caagagagactgagattttcccctatatgttgaagtttgctgaagcttgtggaatacctg 370
Query: 1824 ctgcccgtgtgacaaggaaaaaggatcttagagaagcaatcaaaacaatgttagatactc 1883
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctgcccgtgtgacaaggataaaggatcttagagaagcaatcaaaacaatgttagatactc 310
Query: 1884 cgggaccatatttgttggatgtgattgtgccccatcaagagcatgttttgcccatgatcc 1943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cgggaccatatttgttggatgtgattgtgccccatcaagagcatgttttgcccatgatcc 250
Query: 1944 caagtggtggagcttttaaagatgtgataacagaaggtgatggaagaacaaagtac 1999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caagtggtggagcttttaaagatgtgataacagaaggtgatggaagaacaaagtac 194
>gi|268517444|gb|FM889162.1|FM889162 FM889162 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002751,
mRNA sequence
Length = 525
Score = 426 bits (215), Expect = e-119
Identities = 253/263 (96%), Gaps = 2/263 (0%)
Strand = Plus / Minus
Query: 1738 agctcatacttatttaggggatccatcaagagagactgagattttccccaatatgttgaa 1797
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agctcatacttacttaggggatccatcaagagagactgagattttccccaatatgttgaa 466
Query: 1798 gtttgctgaagcttgtggaatacctgctgcccgtgtgacaaggaaaaaggatcttagaga 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gtttgctgaagcttgtggaatacctgctgcccgtgtgacaaggaaaaaggatcttagaga 406
Query: 1858 ag-caatcaaaacaatgttagatactccgggaccatatttgttggatgtgattgtgcccc 1916
|| | ||| | | |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtctatctca-ctctgtttgttactccgggaccatatttgttggatgtgattgtgcccc 347
Query: 1917 atcaagagcatgttttgcccatgatcccaagtggtggagcttttaaagatgtgataacag 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atcaagagcatgttttgcccatgatcccaagtggtggagcttttaaagatgtgataacag 287
Query: 1977 aaggtgatggaagaacaaagtac 1999
|||||||||||||||||||||||
Sbjct: 286 aaggtgatggaagaacaaagtac 264
>gi|262090819|gb|GT229177.1|GT229177 JC742 Jatropha seeds from fruits
at three stages of maturation Jatropha curcas cDNA clone
PL17SE.E05.scf 5', mRNA sequence
Length = 300
Score = 232 bits (117), Expect = 1e-60
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1883 ccgggaccatatttgttggatgtgattgtgccccatcaagagcatgttttgcccatgatc 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 ccgggaccatatttgttggatgtgattgtgccccatcaagagcatgttttgcccatgatc 76
Query: 1943 ccaagtggtggagcttttaaagatgtgataacagaaggtgatggaagaacaaagtac 1999
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 ccaagtggtggagcttttaaagatgtgataacagaaggtgatggaagaacaaagtac 133