Jatropha Genome Database

JcCA0066751.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0066751.20 + phase: 0 
         (912 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518823|gb|FM889066.1|FM889066 FM889066 Jatropha curcas emb...  1112   0.0  

>gi|268518823|gb|FM889066.1|FM889066 FM889066 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002627,
           mRNA sequence
          Length = 569

 Score = 1112 bits (561), Expect = 0.0
 Identities = 567/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 108 cgttcatggccattatggagaaatcttttacgaaggagatacattagttacatttttata 167
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cgttcatggccattagggagaaatcttttacgaaggagatacattagttacatttttata 510

                                                                       
Query: 168 tgaaaaatcgagatctggtgatataacgcagggtcttccaaaagtggaacaagtgttaga 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgaaaaatcgagatctggtgatataacgcagggtcttccaaaagtggaacaagtgttaga 450

                                                                       
Query: 228 agtgcgctcaattgattcaatatcgataagcctagaaaagagagttgagggttggaacga 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agtgcgctcaattgattcaatatcgataagcctagaaaagagagttgagggttggaacga 390

                                                                       
Query: 288 gtgtataacaagaattcttggaattccttggggattcttgattggtgctgaactaactat 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtgtataacaagaattcttggaattccttggggattcttgattggtgctgaactaactat 330

                                                                       
Query: 348 agtgcaaagtcgtatctctttggttaataagattcaaaaggtttatcgatcccaaggagt 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtgcaaagtcgtatctctttggttaataagattcaaaaggtttatcgatcccaaggagt 270

                                                                       
Query: 408 gcagatacataataggcatatagaaattattgtacgtcaaataacatccaaagttttggt 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gcagatacataataggcatatagaaattattgtacgtcaaataacatccaaagttttggt 210

                                                                       
Query: 468 ttcagaagacggaatgtcaaatgttttttcacccggagaactaattggattgttgcgagc 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttcagaagacggaatgtcaaatgttttttcacccggagaactaattggattgttgcgagc 150

                                                                       
Query: 528 ggaacgaacgggacgcgctttagaagaagccatctgttatcgagccatattattaggaat 587
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ggaacgaaccggacgcgctttagaagaagccatctgttatcgagccatattattaggaat 90

                                                                       
Query: 588 aacgagagcatctctgaatactcaaagtttcatatccgaggccagttttcaagaaactgc 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  aacgagagcatctctgaatactcaaagtttcatatccgaggccagttttcaagaaactgc 30

                                        
Query: 648 tcgcgttttagcaaaagccgctctccgcg 676
           |||||||||||||||||||||||||||||
Sbjct: 29  tcgcgttttagcaaaagccgctctccgcg 1