Jatropha Genome Database

JcCA0065831.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0065831.20 + phase: 1 /pseudo/partial
         (227 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262091122|gb|GT228549.1|GT228549 JC114 Jatropha seeds from fr...    98   5e-21
gi|268526194|gb|FM891450.1|FM891450 FM891450 Jatropha curcas emb...    84   8e-17

>gi|262091122|gb|GT228549.1|GT228549 JC114 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone Contig116 5', mRNA sequence
          Length = 1052

 Score = 97.6 bits (49), Expect = 5e-21
 Identities = 166/205 (80%)
 Strand = Plus / Plus

                                                                       
Query: 4   atggagtgaacagtggtcattagaccctcaacaatcccaaacctatcatttactaccttg 63
           |||||||| ||||| ||||| |||||||||||||| || || | |||||| |  ||||| 
Sbjct: 772 atggagtggacagttgtcataagaccctcaacaatgccgaagcgatcattgataaccttt 831

                                                                       
Query: 64  gccaagggggcaagacagttagtagtgcagctagcattggaaacaatgtcaagctctggc 123
           || |  || ||||| |||||||| |||||||| ||||| || ||||||| ||  ||||||
Sbjct: 832 gcaagaggagcaaggcagttagtggtgcagctggcatttgatacaatgtgaatatctggc 891

                                                                       
Query: 124 ttatattcattctcattaacacccacaacaaacataggtgcatctttgctaggagcagag 183
           || || || | |||||| ||||| ||||||||||| || ||||| ||||| || || |||
Sbjct: 892 ttgtagtcgtgctcattgacaccaacaacaaacatgggagcatccttgcttggggctgag 951

                                    
Query: 184 ataacaaccttcttagcaccaccct 208
           || |  || ||||||||||||||||
Sbjct: 952 atgatgactttcttagcaccaccct 976


>gi|268526194|gb|FM891450.1|FM891450 FM891450 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001742,
           mRNA sequence
          Length = 440

 Score = 83.8 bits (42), Expect = 8e-17
 Identities = 138/170 (81%)
 Strand = Plus / Minus

                                                                       
Query: 4   atggagtgaacagtggtcattagaccctcaacaatcccaaacctatcatttactaccttg 63
           |||||||| ||||| ||||| |||||||||||||| || || | |||||| |  ||||| 
Sbjct: 200 atggagtggacagttgtcataagaccctcaacaatgccgaagcgatcattgataaccttt 141

                                                                       
Query: 64  gccaagggggcaagacagttagtagtgcagctagcattggaaacaatgtcaagctctggc 123
           || |  || ||||| |||||||| |||||||| ||||| || ||||||| ||  ||||||
Sbjct: 140 gcaagaggagcaaggcagttagtggtgcagctggcatttgatacaatgtgaatatctggc 81

                                                             
Query: 124 ttatattcattctcattaacacccacaacaaacataggtgcatctttgct 173
           || || || | |||||| ||||| ||||||||||| || ||||| |||||
Sbjct: 80  ttgtagtcgtgctcattgacaccaacaacaaacatgggagcatccttgct 31