Jatropha Genome Database

JcCA0062081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0062081.10 + phase: 0 
         (270 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518696|gb|FM888939.1|FM888939 FM888939 Jatropha curcas emb...   123   1e-28

>gi|268518696|gb|FM888939.1|FM888939 FM888939 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002463,
           mRNA sequence
          Length = 444

 Score =  123 bits (62), Expect = 1e-28
 Identities = 105/118 (88%), Gaps = 1/118 (0%)
 Strand = Plus / Minus

                                                                       
Query: 117 tggcaacgattatgagcccggtgaggtccatcgtgatcctcccccatactcctgccaaga 176
           ||||| |||||| ||||||| || ||||| ||||||||||||||| || ||  |||||||
Sbjct: 208 tggcagcgattacgagcccgatgtggtccgtcgtgatcctcccccgtattctcgccaaga 149

                                                                     
Query: 177 tcgatattccgatgatcctagatggaggagttgtaatgtcggctatggccaatgtgta 234
           ||||||||||||  ||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 148 tcgatattccgac-atcctggatggaggagttgtaatgtcggctatggccagtgtgta 92



 Score = 93.7 bits (47), Expect = 9e-20
 Identities = 72/79 (91%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgggatcgagagacaaggaccaaatgacatcacatcaccaaccgctacttagcagactt 60
           |||||||||||||  ||||||||||||||||||||||| || |||||||||||||| || 
Sbjct: 296 atgggatcgagagttaaggaccaaatgacatcacatca-cagccgctacttagcagcctc 238

                              
Query: 61  gtcgttcgccctttagtca 79
           ||||||||||||| |||||
Sbjct: 237 gtcgttcgcccttcagtca 219