Jatropha Genome Database
- JcCA0061381.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0061381.20 + phase: 2 /TE
(1371 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas emb... 400 e-111
gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas emb... 335 8e-92
gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas emb... 147 4e-35
>gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537,
mRNA sequence
Length = 557
Score = 400 bits (202), Expect = e-111
Identities = 364/415 (87%), Gaps = 11/415 (2%)
Strand = Plus / Plus
Query: 472 acatcccaagacactgcaactgaacagtttggctgagaggatgaatagaactttgatgga 531
||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 142 acatcccaagacatcgcaactgaacaatttggctgagaggatgaacagaactttgatgga 201
Query: 532 gagagtcagatgtttactctcacatgcaaagttgtctaa-aggttttcgg-tgaagctct 589
||||||||||||| ||||||||||||||||||||||||| || |||| || | ||||| |
Sbjct: 202 gagagtcagatgtgtactctcacatgcaaagttgtctaagagattttggggtaaagcttt 261
Query: 590 tcttacagcagct-------caccttgtgttcctctacagtatgatattccagagcgag- 641
||||||| || | |||| ||| | |||||||||||||||| ||||||| |||
Sbjct: 262 acttacagtagtttatcgttcaccctgtttccctctacagtatgatactccagagagaga 321
Query: 642 -tatggtcaggaaaggatgtttcctatgatcatttgcgggtgtttggttgcaaagtcttc 700
|||||| |||||| ||||| ||||||||||||||||||||||||| ||| |||| ||||
Sbjct: 322 gtatggttaggaaatgatgtatcctatgatcatttgcgggtgtttgattgtaaagccttc 381
Query: 701 gtacatgtcccaaaggatgaacggtctaagcttgatgtcaagactagacagtgtgtattc 760
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 382 gtacatgtcctgaaggatgaacggtcgaagcttgatgttcagactagacagtgtgtattc 441
Query: 761 attggctatggccaagatcaatttggctataagttttatgacccaatccagaagacgatt 820
||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 442 attggttatggcccagaccaatttggctataagttttatgacccaatcccaaagacaatt 501
Query: 821 ataagaagtagtgatgttgtatttgttgaagatcagactattaaagatattgaaa 875
||||||| | |||| ||||||||||||||| || |||||||| ||||||||||||
Sbjct: 502 ataagaaatcgtgaagttgtatttgttgaaaattagactattgaagatattgaaa 556
>gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587,
mRNA sequence
Length = 563
Score = 335 bits (169), Expect = 8e-92
Identities = 347/408 (85%), Gaps = 20/408 (4%)
Strand = Plus / Plus
Query: 384 tgaagtgcatcaggacagataatggtggagaatacactgggccaattgacgctttctaca 443
||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct: 156 tgaagtgcatcagaacagataatggtggagaatacactgggccatttgatactttctgca 215
Query: 444 aagagcatggcattcgacatcaaacaacacatcccaagacactgcaactgaacagtttgg 503
|||||||||| ||||||||||||||||||| ||||||||| | ||||||||| ||||||
Sbjct: 216 aagagcatggtattcgacatcaaacaacacctcccaagacgccgcaactgaatggtttgg 275
Query: 504 ctgagaggatgaatagaactttgatggagagagtcagatgtttactctcacatgcaaagt 563
||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||
Sbjct: 276 ctgagaggatgaatagaacttaaacggagagagtcagatgtttattctcacatgtaaagt 335
Query: 564 tgtctaaaggtttt---cggtgaagctcttcttacagca----------------gctca 604
|||||||| | ||| ||||||||||||||||||||| | |||
Sbjct: 336 tgtctaaaagattttgggggtgaagctcttcttacagcagttcatcttataaatcgttca 395
Query: 605 ccttgtgttcctctacagtatgatattccagagcgagtatggtcaggaaaggatgtttcc 664
|||||||||||||| |||||||||| |||| | ||||||||||||||||| ||||||||
Sbjct: 396 ccttgtgttcctcttcagtatgataatccacaaagagtatggtcaggaaagaatgtttcc 455
Query: 665 tatgatcatttgcgggtgtttggttgcaaagtc-ttcgtacatgtcccaaaggatgaacg 723
|||||| | |||| ||||| ||||||||||| | || || ||| | || |||||||| |
Sbjct: 456 tatgattacttgcaggtgtatggttgcaaaggcatttgtgcatattcctaaggatgagag 515
Query: 724 gtctaagcttgatgtcaagactagacagtgtgtattcattggctatgg 771
|||||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct: 516 gtctaagcttgatgtcaaaactcgacaatgtgtattcattggctatgg 563
>gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002630,
mRNA sequence
Length = 509
Score = 147 bits (74), Expect = 4e-35
Identities = 117/130 (90%), Gaps = 1/130 (0%)
Strand = Plus / Minus
Query: 1 acaagactgatgaggaatgagctttcgagcatgctttcaaatctcagttggtaga-tttg 59
|||||||||||||||||| |||||||||||||| | |||||||| |||| ||| ||||
Sbjct: 405 acaagactgatgaggaataggctttcgagcatgcgtccaaatctcgtttggcagactttg 346
Query: 60 atgatgaaggtttctgtagcaccttcagaaatggtcagtggaagctcacaaaatgttcat 119
|||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||
Sbjct: 345 atgatgaaggtttctgtagcaccttctaacatggtcagtggaagctcaccaaaggttcat 286
Query: 120 ttgtggtagc 129
||||||||||
Sbjct: 285 ttgtggtagc 276
Score = 139 bits (70), Expect = 9e-33
Identities = 143/163 (87%), Gaps = 7/163 (4%)
Strand = Plus / Minus
Query: 142 aactctggtaagaaagaacatactacctgaattggataaagttcacctagacaagtgtcc 201
|||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||| |||
Sbjct: 159 aactctggcaagaaagaacgtactacctggattggatgaagttcacctagacaagtatcc 100
Query: 202 tgattgtatggcgggaaagcaaaacag-agtagctttgaagattatccctccttccagaa 260
|||||| |||||| |||||| |||||| ||||||||| ||||||| ||||| ||||
Sbjct: 99 tgattggatggcgagaaagctaaacagcagtagctttcaagatta----cccttctagaa 44
Query: 261 tgaagaat-gtattagatctgattcatttagat-ttgtgtgga 301
|||||||| |||||| |||||||||||| |||| |||||||||
Sbjct: 43 tgaagaatcgtattaaatctgattcattcagatcttgtgtgga 1