Jatropha Genome Database

JcCA0060021.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0060021.10 - phase: 0 
         (1521 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas emb...   741   0.0  

>gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004251,
           mRNA sequence
          Length = 525

 Score =  741 bits (374), Expect = 0.0
 Identities = 462/497 (92%), Gaps = 2/497 (0%)
 Strand = Plus / Plus

                                                                       
Query: 406 ctttttagtgctaaaagagttcaatcgtttcaatcc-gttagagaagaagaagtgggtct 464
           ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 1   ctttttagtgctaaaagagctcaatcgtttcaatcctgttagagaagaagaagtgggtct 60

                                                                       
Query: 465 tttcatagattcgattttaaaannnnnnnnnnnnnnnnnncctgtggatcttagtgaaaa 524
           ||||||||||||||||||||||                  ||||||||||||||||||||
Sbjct: 61  tttcatagattcgattttaaaatcttcttcttcttcttctcctgtggatcttagtgaaaa 120

                                                                       
Query: 525 aattatgtctcttattgcaaatgttacttgtagagtagcttttgggaatagttttgcaac 584
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattatgtctcttactgcaaatgttacttgtagagtagcttttgggaatagttttgcaac 180

                                                                       
Query: 585 aagaggatttacccaggaaaggtttcaagaagtgattcatgaagctttagccaagttagg 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagaggatttacccaggaaaggtttcaagaagtgattcatgaagctttagccaagttagg 240

                                                                       
Query: 645 gggnnnnnnngcatctgacttttttccttatgtgggttggattgttgataggattacagg 704
           |||       |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 241 gggtttttctgcatctgacttttttccttatgtgggttggattgttgatagggttacagg 300

                                                                       
Query: 705 tctccattcaaaactggaaagaagctttcaagaacttgatgaattctaccagaagattat 764
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 tctccattcaaaactggaaagaagctttcaagaacttgatgaattccaccagaagattat 360

                                                                       
Query: 765 tgaggatcatatccaaaagggaaaagagaagcatggacatcaagatattgtcgatgtttt 824
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | 
Sbjct: 361 tgaggatcatatccaaaacggaaaagagaagcatggacatcaagatattgtcgatgtata 420

                                                                       
Query: 825 gttggatttggagagatatcaaactgaatctgaaggaattcaattctctaaaagtcac-a 883
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 421 gtcggatttggagagatatcaaactgaatctgaaggaattcaattctctaaaagtcacaa 480

                            
Query: 884 tcaaagcaattatcatg 900
           |||||||||||||||||
Sbjct: 481 tcaaagcaattatcatg 497