Jatropha Genome Database

JcCA0045971.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0045971.30 + phase: 0 /partial
         (851 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524325|gb|FM895005.1|FM895005 FM895005 Jatropha curcas emb...   170   2e-42
gi|268524931|gb|FM895629.1|FM895629 FM895629 Jatropha curcas emb...    64   3e-10
gi|268522152|gb|FM892992.1|FM892992 FM892992 Jatropha curcas emb...    60   4e-09

>gi|268524325|gb|FM895005.1|FM895005 FM895005 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001334,
           mRNA sequence
          Length = 541

 Score =  170 bits (86), Expect = 2e-42
 Identities = 109/114 (95%), Gaps = 2/114 (1%)
 Strand = Plus / Minus

                                                                       
Query: 737 acccgaaggatcatgaccgtccagttcaac-agataattgcag-agatgacaaatggtgg 794
           |||||||||||||||||||||||||||||| |||||||||||| |||| |||| ||||||
Sbjct: 541 acccgaaggatcatgaccgtccagttcaaccagataattgcagtagattacaattggtgg 482

                                                                 
Query: 795 agtagacaggagtgtggagtgcacagggcacattgacgccatggttgcagcttt 848
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agtagacaggagtggggagtgcacagggcacattgacgccatggttgcagcttt 428


>gi|268524931|gb|FM895629.1|FM895629 FM895629 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002581,
           mRNA sequence
          Length = 574

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                       
Query: 31  tgcaaagctgcggtggcatgggaggcaggcaagccattggtgatcgagcaagtggaggta 90
           |||||||| |||||||||||||||||||| || ||| ||||||| ||  |||||||||| 
Sbjct: 95  tgcaaagccgcggtggcatgggaggcagggaaaccactggtgattgaagaagtggaggtg 154

                   
Query: 91  gctccacc 98
           || |||||
Sbjct: 155 gcaccacc 162


>gi|268522152|gb|FM892992.1|FM892992 FM892992 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003709,
           mRNA sequence
          Length = 523

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 715 tttggagtaactgaatttgtgaacccgaaggatcatga 752
           |||||||| |||||||||||||| ||||||||||||||
Sbjct: 167 tttggagttactgaatttgtgaatccgaaggatcatga 204