Jatropha Genome Database

JcCA0045771.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0045771.10 - phase: 0 /pseudo/partial
         (1419 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas emb...   335   8e-92

>gi|268516693|gb|FM890400.1|FM890400 FM890400 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004251,
           mRNA sequence
          Length = 525

 Score =  335 bits (169), Expect = 8e-92
 Identities = 418/500 (83%), Gaps = 5/500 (1%)
 Strand = Plus / Plus

                                                                       
Query: 397 ctttttagcgctaaaagagttcaatcattccaatccact-agagaagaagaagtgggttt 455
           |||||||| |||||||||| |||||| || ||||||  | |||||||||||||||||| |
Sbjct: 1   ctttttagtgctaaaagagctcaatcgtttcaatcctgttagagaagaagaagtgggtct 60

                                                                       
Query: 456 tttaatcgattcgattttaaaatcttcttcagcctcttcttctcctgttgatctaagtga 515
           ||| || |||||||||||||||||||||||    |||||||||||||| ||||| |||||
Sbjct: 61  tttcatagattcgattttaaaatcttcttct---tcttcttctcctgtggatcttagtga 117

                                                                       
Query: 516 aaagactttttctcttactgcaaatgttacctgtagagtagcttttggggaaagttttca 575
           ||| | | | |||||||||||||||||||| |||||||||||||||||| | ||||||  
Sbjct: 118 aaaaattatgtctcttactgcaaatgttacttgtagagtagcttttgggaatagttttgc 177

                                                                       
Query: 576 agaaagaggacttgcccatgaaagatttcaagaagtgattcatgaagggttggctatgtt 635
           |  ||||||| || |||| ||||| ||||||||||||||||||||||  || || | |||
Sbjct: 178 aacaagaggatttacccaggaaaggtttcaagaagtgattcatgaagctttagccaagtt 237

                                                                       
Query: 636 ggggagtttttctgcagctgannnnnnnccttatgtgggttggattgttgataggcttac 695
            ||| ||||||||||| ||||       ||||||||||||||||||||||||||| ||||
Sbjct: 238 agggggtttttctgcatctgacttttttccttatgtgggttggattgttgatagggttac 297

                                                                       
Query: 696 aggtctccatgaaagactagaaagaaactttcaagaatttgatgagttataccaagagat 755
           ||||||||||  || ||| ||||||| |||||||||| ||||||| ||  ||||  ||||
Sbjct: 298 aggtctccattcaaaactggaaagaagctttcaagaacttgatgaattccaccagaagat 357

                                                                       
Query: 756 tattgatgatcatatccaaaagggaaaatcagatcctggacatgaagatatcgttgatgt 815
           |||||| |||||||||||||| ||||||    | | ||||||| ||||||| || |||||
Sbjct: 358 tattgaggatcatatccaaaacggaaaagagaagcatggacatcaagatattgtcgatgt 417

                                                                       
Query: 816 tttgttggatatggagaaagatcaaactgaatctggtggaattcaattctctcaaaatca 875
            | || |||| |||||| | |||||||||||||||  ||||||||||||||| ||| |||
Sbjct: 418 atagtcggatttggagagatatcaaactgaatctgaaggaattcaattctctaaaagtca 477

                               
Query: 876 -tatcaaagcaattctcatg 894
             |||||||||||| |||||
Sbjct: 478 caatcaaagcaattatcatg 497