Jatropha Genome Database

JcCA0045701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0045701.10 - phase: 0 
         (744 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522713|gb|FM896156.1|FM896156 FM896156 Jatropha curcas emb...   541   e-154
gi|268522592|gb|FM896633.1|FM896633 FM896633 Jatropha curcas emb...    76   6e-14

>gi|268522713|gb|FM896156.1|FM896156 FM896156 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003321,
           mRNA sequence
          Length = 597

 Score =  541 bits (273), Expect = e-154
 Identities = 291/297 (97%)
 Strand = Plus / Plus

                                                                       
Query: 12  gggctctaagccacctccactggagattgcaggcactccaacaaacatcagtgcatgttc 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gggctctaagccacctccactggagattgcaggcactccaacaaacatcagtgcatgttc 360

                                                                       
Query: 72  ctctattcaacctagcccacaatcctcaaatttccctagtcctgttccttcctaccatgt 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 361 ctctattcaacctagcccacaatcctcaaatttccctagtcctgttccttcctaccatgc 420

                                                                       
Query: 132 cagtccaacatcctcttcatttccgagccctactcgtttcgacgcaaatccttccacata 191
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 421 cagtccaacatcctcttcatttccgagccctactcgtttcgatgcaaatccttccacata 480

                                                                       
Query: 192 ccttctccctttcctccgtaacatagcttcgatccctgcaaacctccctcagcttagaat 251
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 481 ccttctccctttcctccgtaacatagcttcaatccctgcgaacctccctcagcttagaat 540

                                                                    
Query: 252 atccaatagtgctcctgtaactccaccgctttcttcccctactaatagaagttcaaa 308
           |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 541 atccaatagtgctcctgttactccaccggtttcttcccctactaatagaagttcaaa 597


>gi|268522592|gb|FM896633.1|FM896633 FM896633 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003901,
           mRNA sequence
          Length = 271

 Score = 75.8 bits (38), Expect = 6e-14
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                 
Query: 707 tcgagctcacacttgggagcgcaaaggctcatggttaa 744
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcgagctcacacttgggagcgcaaaggctcatggttaa 234