Jatropha Genome Database
- JcCA0045571.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0045571.20 + phase: 0 /TE
(4038 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas emb... 666 0.0
gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas emb... 369 e-101
gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas emb... 252 3e-66
gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas emb... 127 1e-28
>gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587,
mRNA sequence
Length = 563
Score = 666 bits (336), Expect = 0.0
Identities = 422/448 (94%), Gaps = 2/448 (0%)
Strand = Plus / Plus
Query: 1600 caatttctaaacttggttgagcgacagacaggcaaaaagctgaagtgcatcagaacagat 1659
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 116 caatttctaaacttggttgagcgacaaacgggcaagaagctgaagtgcatcagaacagat 175
Query: 1660 aatggtggagaatacactgggatatttgatgctttctgcaaagagcatggtattcaacat 1719
||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct: 176 aatggtggagaatacactgggccatttgatactttctgcaaagagcatggtattcgacat 235
Query: 1720 caaacaacacctcccaagatgccgcaactgaatagtttggctgagaggatgaacagaact 1779
||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 236 caaacaacacctcccaagacgccgcaactgaatggtttggctgagaggatgaatagaact 295
Query: 1780 ttaatggagagagttagatgtttactctcacatgcaaagttgtctaaaagatttt-gggg 1838
| || ||||||||| ||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct: 296 taaacggagagagtcagatgtttattctcacatgtaaagttgtctaaaagattttggggg 355
Query: 1839 tgaagctcttcttacagcagttcatcttataaatcgttcactttgtgttcctctacagta 1898
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 356 tgaagctcttcttacagcagttcatcttataaatcgttcaccttgtgttcctcttcagta 415
Query: 1899 tgatactccagaaagagtatggtcaggaaaggatgtttcctatgatcacttgcgggtgtt 1958
||||| |||| |||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 416 tgataatccacaaagagtatggtcaggaaagaatgtttcctatgattacttgcaggtgta 475
Query: 1959 tggttgcaaa-gcatttgtgcatattcctaaggatgagaggtctaagcttgatgtcaaga 2017
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 476 tggttgcaaaggcatttgtgcatattcctaaggatgagaggtctaagcttgatgtcaaaa 535
Query: 2018 ctcgacaatgtgtattcattggctatgg 2045
||||||||||||||||||||||||||||
Sbjct: 536 ctcgacaatgtgtattcattggctatgg 563
>gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895,
mRNA sequence
Length = 495
Score = 369 bits (186), Expect = e-101
Identities = 345/398 (86%), Gaps = 10/398 (2%)
Strand = Plus / Plus
Query: 3086 tagcttgaagaaacagctaagtaagtcttttgctatgaaagacttgggaccagcaaagca 3145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 tagcttgaagaaacagctaagtaagtcttttgctatgaaagacttgggaccagcaaagca 105
Query: 3146 gattcttggcatgaagattacaaggaatcgtagaaccaagaaattatggttgtcacagga 3205
||||||||||| ||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 106 aattcttggcataaagat--caa--------agagccaagaaattatggttgtcacagga 155
Query: 3206 gaagtacattgagaaagtacttcaaaggttcaaaatggagaatgctaaagcggttagttg 3265
|||||||||||||||||||||||||||||| | |||||| || |||||||| |||||||
Sbjct: 156 gaagtacattgagaaagtacttcaaaggtttagaatggaaaacgctaaagctgttagtta 215
Query: 3266 tcctcttgctaatcatcttaaattaagctcaaaacagtgcccttctaccgatggggagaa 3325
||||||| |||| | ||||||| || || ||| |||| ||||||| ||||| |||||
Sbjct: 216 tcctcttaataataactttaaattgagttctaaatagtgtccttctagggatggagagaa 275
Query: 3326 ggaacagatggacaagatttcatatgcttcagcagttggaagcttaatgtatgccatggt 3385
|||| | | ||| |||||| |||||||||||||||||| |||||| ||| || |||| |
Sbjct: 276 ggaagaaaaggaaaagattccatatgcttcagcagttgaaagcttgatgaatatcatgat 335
Query: 3386 ttgtacacgggcagatattgctcactcagttggagtagtgagtcgatttctttcaaatcc 3445
|||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 336 ttgtacacagctagatattgctcactcagttagagtagtgagtcggtttctttcaaatcc 395
Query: 3446 tggaaaagaacattgggctgcagtaaaatggattttca 3483
| |||| |||||||| ||||||| |||||||||||||
Sbjct: 396 tagaaagaaacattggactgcagtgaaatggattttca 433
>gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537,
mRNA sequence
Length = 557
Score = 252 bits (127), Expect = 3e-66
Identities = 276/326 (84%), Gaps = 11/326 (3%)
Strand = Plus / Plus
Query: 1742 cgcaactgaatagtttggctgagaggatgaacagaactttaatggagagagttagatgtt 1801
|||||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 156 cgcaactgaacaatttggctgagaggatgaacagaactttgatggagagagtcagatgtg 215
Query: 1802 tactctcacatgcaaagttgtctaaaagattttggggtgaagctcttcttacagcagttc 1861
||||||||||||||||||||||||| |||||||||||| ||||| | ||||||| ||||
Sbjct: 216 tactctcacatgcaaagttgtctaagagattttggggtaaagctttacttacagtagtt- 274
Query: 1862 atcttataaatcgttcactttgtgttcctctacagtatgatactcc--agaaagagtatg 1919
||||||||| ||| | |||||||||||||||||||| ||| ||||||||
Sbjct: 275 --------tatcgttcaccctgtttccctctacagtatgatactccagagagagagtatg 326
Query: 1920 gtcaggaaaggatgtttcctatgatcacttgcgggtgtttggttgcaaagcatttgtgca 1979
|| |||||| ||||| ||||||||||| ||||||||||||| ||| ||||| || || ||
Sbjct: 327 gttaggaaatgatgtatcctatgatcatttgcgggtgtttgattgtaaagccttcgtaca 386
Query: 1980 tattcctaaggatgagaggtctaagcttgatgtcaagactcgacaatgtgtattcattgg 2039
| | | |||||||| |||| ||||||||||| ||||| |||| ||||||||||||||
Sbjct: 387 tgtcctgaaggatgaacggtcgaagcttgatgttcagactagacagtgtgtattcattgg 446
Query: 2040 ctatggccaagatcaatttggctata 2065
||||||| ||| |||||||||||||
Sbjct: 447 ttatggcccagaccaatttggctata 472
>gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002630,
mRNA sequence
Length = 509
Score = 127 bits (64), Expect = 1e-28
Identities = 121/140 (86%), Gaps = 5/140 (3%)
Strand = Plus / Minus
Query: 22 atgatcagtctaaatggcgcaaattaccatatatggagaaataaaatgagagatctcctt 81
||||||| ||||||||||| ||||||||||||||||||||| | || ||||||||
Sbjct: 509 atgatcaatctaaatggcgggaattaccatatatggagaaattatat-----atctcctt 455
Query: 82 atggtaaccaaaatgcatttgcccgtgtttggttcaagcaaaccggaagacaagactgat 141
|||||| ||||||| ||||||| |||||| |||||| |||||||||||||||||||||
Sbjct: 454 atggtactcaaaatgtatttgcctgtgtttagttcaactaaaccggaagacaagactgat 395
Query: 142 gaagaatgggctttcgagca 161
|| |||| ||||||||||||
Sbjct: 394 gaggaataggctttcgagca 375
Score = 61.9 bits (31), Expect = 5e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 1098 aatctcgattggcagactt-gatgatgaaaatttctgtagcaccttcagaaaaggccaat 1156
||||||| ||||||||||| ||||||||| |||||||||||||||| | | || || |
Sbjct: 366 aatctcgtttggcagactttgatgatgaaggtttctgtagcaccttctaacatggtcagt 307
Query: 1157 ggaagctcacaaaaggttc 1175
|||||||||| ||||||||
Sbjct: 306 ggaagctcaccaaaggttc 288