Jatropha Genome Database
- JcCA0043871.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0043871.20 + phase: 0 /TE
(3988 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas emb... 698 0.0
gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas emb... 410 e-114
gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas emb... 252 3e-66
gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas emb... 107 1e-22
>gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587,
mRNA sequence
Length = 563
Score = 698 bits (352), Expect = 0.0
Identities = 426/448 (95%), Gaps = 2/448 (0%)
Strand = Plus / Plus
Query: 1597 caatttctaaacttggttgagcgacagacaggcaagaagctgaagtgcatcagaacagat 1656
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 116 caatttctaaacttggttgagcgacaaacgggcaagaagctgaagtgcatcagaacagat 175
Query: 1657 aatggtggagaatacactgggccatttgatgctttctgcaaagagcatggtattcgacat 1716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 176 aatggtggagaatacactgggccatttgatactttctgcaaagagcatggtattcgacat 235
Query: 1717 caaacaacacctcccaagacgccgcagttgaatggtttggctgagaggatgaatagaact 1776
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 236 caaacaacacctcccaagacgccgcaactgaatggtttggctgagaggatgaatagaact 295
Query: 1777 ttgatggagagagttcgatgtttactctcacatgcaaagttgtctaaaagatttt-gggg 1835
| | ||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct: 296 taaacggagagagtcagatgtttattctcacatgtaaagttgtctaaaagattttggggg 355
Query: 1836 tgaagctcttcttacagcagttcatcttataaatcgttcaccttgtgttcctcttcagta 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgaagctcttcttacagcagttcatcttataaatcgttcaccttgtgttcctcttcagta 415
Query: 1896 tgatactccagaacgagtatggtcaggaaaggatgtttcctatgatcacttgcgggtgtt 1955
||||| |||| || ||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 416 tgataatccacaaagagtatggtcaggaaagaatgtttcctatgattacttgcaggtgta 475
Query: 1956 tggttgcaaa-gcatttgtgcatattcctaaggatgagaggtctaagcttgatgtcaaga 2014
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 476 tggttgcaaaggcatttgtgcatattcctaaggatgagaggtctaagcttgatgtcaaaa 535
Query: 2015 ctcgacaatgtgtattcattggctatgg 2042
||||||||||||||||||||||||||||
Sbjct: 536 ctcgacaatgtgtattcattggctatgg 563
>gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895,
mRNA sequence
Length = 495
Score = 410 bits (207), Expect = e-114
Identities = 349/398 (87%), Gaps = 10/398 (2%)
Strand = Plus / Plus
Query: 3084 tagcttgaagaaacagctaagtaagtcttttgctatgaaagacttgggaccagcaaaaca 3143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 46 tagcttgaagaaacagctaagtaagtcttttgctatgaaagacttgggaccagcaaagca 105
Query: 3144 gattcttggtatgaagattacgagaaatcgaagaaccaagaaattatggttgtcacagga 3203
|||||||| || ||||| | |||| |||||||||||||||||||||||||
Sbjct: 106 aattcttggcataaagatca----------aagagccaagaaattatggttgtcacagga 155
Query: 3204 gaagtacattgagaaagtacttcaaaggtttaaaatggaaaattctaaagcggttagttg 3263
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct: 156 gaagtacattgagaaagtacttcaaaggtttagaatggaaaacgctaaagctgttagtta 215
Query: 3264 tcctcttgctaatcactttaaattaagctcaaaacagtgcccttctactgatggagagaa 3323
||||||| |||| |||||||||| || || ||| |||| ||||||| |||||||||||
Sbjct: 216 tcctcttaataataactttaaattgagttctaaatagtgtccttctagggatggagagaa 275
Query: 3324 ggaagtgatggaaaagattccatatgcttcagcagttggaagcttaatgtatgccatggt 3383
||||| | ||||||||||||||||||||||||||||| |||||| ||| || |||| |
Sbjct: 276 ggaagaaaaggaaaagattccatatgcttcagcagttgaaagcttgatgaatatcatgat 335
Query: 3384 ttgtacacggccagatattgctcattcagtcggagtagtgagtcggtttctttcaaatcc 3443
|||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 336 ttgtacacagctagatattgctcactcagttagagtagtgagtcggtttctttcaaatcc 395
Query: 3444 tggaaaggaacattgggctgcagtaaaatggattttca 3481
| ||||| |||||||| ||||||| |||||||||||||
Sbjct: 396 tagaaagaaacattggactgcagtgaaatggattttca 433
>gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537,
mRNA sequence
Length = 557
Score = 252 bits (127), Expect = 3e-66
Identities = 330/398 (82%), Gaps = 11/398 (2%)
Strand = Plus / Plus
Query: 1752 tttggctgagaggatgaatagaactttgatggagagagttcgatgtttactctcacatgc 1811
|||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct: 169 tttggctgagaggatgaacagaactttgatggagagagtcagatgtgtactctcacatgc 228
Query: 1812 aaagttgtctaaaagattttggggtgaagctcttcttacagcagttcatcttataaatcg 1871
|||||||||||| |||||||||||| ||||| | ||||||| |||| ||||
Sbjct: 229 aaagttgtctaagagattttggggtaaagctttacttacagtagtt---------tatcg 279
Query: 1872 ttcaccttgtgttcctcttcagtatgatactcc--agaacgagtatggtcaggaaaggat 1929
|||||| ||| | ||||| |||||||||||||| ||| ||||||||| |||||| |||
Sbjct: 280 ttcaccctgtttccctctacagtatgatactccagagagagagtatggttaggaaatgat 339
Query: 1930 gtttcctatgatcacttgcgggtgtttggttgcaaagcatttgtgcatattcctaaggat 1989
|| ||||||||||| ||||||||||||| ||| ||||| || || ||| | | ||||||
Sbjct: 340 gtatcctatgatcatttgcgggtgtttgattgtaaagccttcgtacatgtcctgaaggat 399
Query: 1990 gagaggtctaagcttgatgtcaagactcgacaatgtgtattcattggctatggccaagat 2049
|| |||| ||||||||||| ||||| |||| |||||||||||||| ||||||| |||
Sbjct: 400 gaacggtcgaagcttgatgttcagactagacagtgtgtattcattggttatggcccagac 459
Query: 2050 caatttggctatagattttttgatccactccagaaaaagatgataagaagtagagatgct 2109
||||||||||||| |||| ||| ||| ||| || | || ||||||| | | || | |
Sbjct: 460 caatttggctataagttttatgacccaatcccaaagacaattataagaaatcgtgaagtt 519
Query: 2110 gtatttgttgaaaatcagactattgaagatgttgaaac 2147
||||||||||||||| |||||||||||||| |||||||
Sbjct: 520 gtatttgttgaaaattagactattgaagatattgaaac 557
>gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002630,
mRNA sequence
Length = 509
Score = 107 bits (54), Expect = 1e-22
Identities = 120/142 (84%), Gaps = 5/142 (3%)
Strand = Plus / Minus
Query: 22 atgatcagtctaaatggcgcaaattaccatatatggagaaataaaatgagagatctcctt 81
||||||| ||||||||||| ||||||||||||||||||||| | || ||||||||
Sbjct: 509 atgatcaatctaaatggcgggaattaccatatatggagaaattatat-----atctcctt 455
Query: 82 atggtaaccaaaatgcatctgcccgtgtttggttcaagcaaaccggcagataagactgat 141
|||||| ||||||| || |||| |||||| |||||| ||||||| ||| |||||||||
Sbjct: 454 atggtactcaaaatgtatttgcctgtgtttagttcaactaaaccggaagacaagactgat 395
Query: 142 gaagaatgggctttcgagcatg 163
|| |||| ||||||||||||||
Sbjct: 394 gaggaataggctttcgagcatg 373
Score = 61.9 bits (31), Expect = 5e-09
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 1095 aatctcggttggcagactt-gatgctgaaaatttctgtagcaccttcagaaatgggaagt 1153
||||||| ||||||||||| |||| |||| |||||||||||||||| | |||| |||
Sbjct: 366 aatctcgtttggcagactttgatgatgaaggtttctgtagcaccttctaacatggtcagt 307
Query: 1154 ggaagctcacaaaaggttc 1172
|||||||||| ||||||||
Sbjct: 306 ggaagctcaccaaaggttc 288
Score = 54.0 bits (27), Expect = 1e-06
Identities = 70/83 (84%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 1203 aaagctgtatgtgatgcatgcgaagctctcccgagatgcttttaatgtag-cagaggatg 1261
|||| |||| |||||||||||| | |||| || ||| |||| | ||||| ||||| |||
Sbjct: 266 aaagatgtacgtgatgcatgcgtaactcttccaagacactttgagtgtagtcagagaatg 207
Query: 1262 acagtgcagttgaattgtggcat 1284
||||| |||||||||||||||||
Sbjct: 206 acagtacagttgaattgtggcat 184