Jatropha Genome Database

JcCA0043071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0043071.10 + phase: 0 /partial
         (774 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517651|gb|FM893620.1|FM893620 FM893620 Jatropha curcas emb...   678   0.0  

>gi|268517651|gb|FM893620.1|FM893620 FM893620 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004512,
           mRNA sequence
          Length = 354

 Score =  678 bits (342), Expect = 0.0
 Identities = 349/350 (99%), Gaps = 1/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 45  agatgagccaacaataatggcttgggagcttatgaatgagcccagatgcacttcagatcc 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   agatgagccaacaataatggcttgggagcttatgaatgagcccagatgcacttcagatcc 64

                                                                       
Query: 105 ttctggaaggaccattcaggcttggattgcagagatggcttcttatttgaaatccataga 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ttctggaaggaccattcaggcttggattgcagagatggcttcttatttgaaatccataga 124

                                                                       
Query: 165 tggcaaccacttattagaagcaggattggaagggttttacggaccaacatcatcttcaaa 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tggcaaccacttattagaagcaggattggaagggttttacggaccaacatcatcttcaaa 184

                                                                       
Query: 225 acagcaatataatcccaactttcaaataggcacagattttattgcaaacaatcaaattcc 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acagcaatataatcccaactttcaaataggcacagattttattgcaaacaatcaaattcc 244

                                                                       
Query: 285 tggcattgattttgccactgttcactcttaccctgaccaatggctgcccaactcaaatac 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tggcattgattttgccactgttcactcttaccctgaccaatggctgcccaactcaaatac 304

                                                             
Query: 345 tgaaggccagg-aatcctttttgaacaattggcttaacaatcacatccaa 393
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgaaggccaggaaatcctttttgaacaattggcttaacaatcacatccaa 354