Jatropha Genome Database

JcCA0042831.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0042831.10 - phase: 0 /pseudo
         (1026 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680755|gb|GO246967.1|GO246967 JcrME_RL0511 Expressed seque...   664   0.0  

>gi|237680755|gb|GO246967.1|GO246967 JcrME_RL0511 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 626

 Score =  664 bits (335), Expect = 0.0
 Identities = 345/347 (99%), Gaps = 1/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 157 ttcacagttcctcaaagattcttcctgcacttttacttggtgggtgttgcgttgacaact 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttcacagttcctcaaagattcttcctgcacttttacttggtgggtgttgcgttgacaact 552

                                                                       
Query: 217 tttttgctgatcataatttggggttatgcatataaattggcttccttggattctggctca 276
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tttt-gctgatcataatttggggttatgcatataaattggcttccttggattctggctca 493

                                                                       
Query: 277 ttggattactctacagcagctagtcaattggttggaggttcacagatatattccttgcac 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttggattactctacagcagctagtcaattggttggaggttcacagatatattccttgcac 433

                                                                       
Query: 337 gtgtctcatttccccaccttagcatacaggcacaaaatctggatatctgtgtttctgctt 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtgtctcatttccccaccttagcatacaggcacaaaatctggatatctgtgtttctgctt 373

                                                                       
Query: 397 ttattaatggaaatgcaagtcttgaggcgcctttatgagacagtttatgtcttgaagtac 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttattaatggaaatgcaagtcttgaggcgcctttatgagacagtttatgtcttgaagtac 313

                                                          
Query: 457 agctcttcagctcgaatgcatatttttggctatctagtgggcctttt 503
           |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 312 agctcttcagctcgaatgcatatttttggctatctagtggccctttt 266