Jatropha Genome Database
- JcCA0041501.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0041501.20 - phase: 1 /TE
(4005 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268516665|gb|FM887144.1|FM887144 FM887144 Jatropha curcas emb... 272 3e-72
gi|268517507|gb|FM889218.1|FM889218 FM889218 Jatropha curcas emb... 94 1e-18
>gi|268516665|gb|FM887144.1|FM887144 FM887144 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000247,
mRNA sequence
Length = 564
Score = 272 bits (137), Expect = 3e-72
Identities = 411/501 (82%), Gaps = 1/501 (0%)
Strand = Plus / Plus
Query: 3417 tataaaacagcatttacagttcccttcggtcaatatgaatggaatgtaatgccttttgga 3476
||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 1 tataaaacagcatttaccgttccatttggtcaatacgaatggaatgtaatgccttttgga 60
Query: 3477 ttaaaaaatgctccttctgagtttcagaggatcatgaatgatatatttaatccctatagt 3536
|||||||||||||||||||| ||||||||||||||||||||||| ||||| || | | |
Sbjct: 61 ttaaaaaatgctccttctgaatttcagaggatcatgaatgatatttttaacccatgttat 120
Query: 3537 gaattttgtatagtatatattgatgatgttctagtttttagtagaacattagaagaacat 3596
|||||||||| || |||||||||||||| || | ||||||| ||| ||||||| |||
Sbjct: 121 aaattttgtattgtttatattgatgatgtgcttatatttagtacaactctagaagatcat 180
Query: 3597 tttaaacacttaaaaacattttgcatggtaattgaaatgaatggattagcattgagtaaa 3656
|||||||| |||||||||||||| ||| | || || | ||||| |||||||| ||||||
Sbjct: 181 tttaaacatttaaaaacattttgtatgatcatcgagaaaaatggtttagcattaagtaaa 240
Query: 3657 actaaaatggacttatttaaaactaaagttaggtttttgggtcattacatagaacagggt 3716
|| ||||||| || |||||||||||| | || ||||| || ||||| |||||||| |||
Sbjct: 241 gctgaaatggatttgtttaaaactaaaataagatttttaggccattatatagaacaaggt 300
Query: 3717 cttatccagcctatagaacgagctatggtatttgggtccaagttccctgatgagttaact 3776
|| || ||||||||| |||| | || ||||| || || |||||||| | ||
Sbjct: 301 aagattcaacctatagaaagagcacttgtttttggtgaaaaatttcctgatgaaatttct 360
Query: 3777 aataaaacccaacttcaacgttttcttggatgtttaaactatgt-tatagatttttatcc 3835
|||||| ||||| | |||||||||||||| |||||||| ||||| || ||||| |||||
Sbjct: 361 aataaaccccaattacaacgttttcttggttgtttaaattatgtaaattgatttatatcc 420
Query: 3836 aaacctgaattgcatgataaaaccgttacatgataggcttaagaaaaatactggcccatg 3895
|| | |||||||||||||||| |||||| |||| ||| |||||| |||| || ||
Sbjct: 421 gaatttatattgcatgataaaacccttacataatagactttgtaaaaatgctggtccttg 480
Query: 3896 gacagcccagcacacccaact 3916
|||| | | |||||| |||||
Sbjct: 481 gacaactctgcacactcaact 501
>gi|268517507|gb|FM889218.1|FM889218 FM889218 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002818,
mRNA sequence
Length = 542
Score = 93.7 bits (47), Expect = 1e-18
Identities = 169/208 (81%), Gaps = 2/208 (0%)
Strand = Plus / Plus
Query: 303 aacccaataacaattcgtgataaaagaccagaatggatagtaaatgataggataatncan 362
||||| ||||||||| | |||| |||||| ||||||||||||||||| | || |
Sbjct: 103 aaccctataacaattagagatagaagacctgaatggatagtaaatgaacaaaccataaaa 162
Query: 363 agtgattttcctcctaaagccattagtaantttaaatatcaagataatgatattacttgt 422
|||||||||||||||||| | |||||||| || ||||||||||| ||||| |||| ||||
Sbjct: 163 agtgattttcctcctaaaacaattagtaaattaaaatatcaagacaatgaaattaattgt 222
Query: 423 g-caccatataaagtagctagag-aaaatgattcagataaaaaattaattgagcaaaata 480
| |||| |||||| | ||| || | |||||| | ||||||| |||||| || ||||
Sbjct: 223 gccaccttataaaattgctcaagcataatgatgtaaataaaaaggaaattgaacagaata 282
Query: 481 attttagtaatgctagtttaatttgttt 508
| ||||||||||| ||||||||||||||
Sbjct: 283 actttagtaatgcaagtttaatttgttt 310