Jatropha Genome Database
- JcCA0036251.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0036251.10 + phase: 1 /pseudo/partial
(506 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268521902|gb|FM892742.1|FM892742 FM892742 Jatropha curcas emb... 494 e-140
gi|268521102|gb|FM891821.1|FM891821 FM891821 Jatropha curcas emb... 478 e-135
gi|268523003|gb|FM896446.1|FM896446 FM896446 Jatropha curcas emb... 305 3e-83
gi|268524315|gb|FM894995.1|FM894995 FM894995 Jatropha curcas emb... 299 2e-81
>gi|268521902|gb|FM892742.1|FM892742 FM892742 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003368,
mRNA sequence
Length = 512
Score = 494 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 184 ggataccaatctggtcatatgcaaagcttatcatgacatgctggttagtgatcccatact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggataccaatctggtcatatgcaaagcttatcatgacatgctggttagtgatcccatact 295
Query: 244 tcagtggcgctgcttatgtttatgagcactttgtgagacctctctttgttaacccaaaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tcagtggcgctgcttatgtttatgagcactttgtgagacctctctttgttaacccaaaac 355
Query: 304 aaaccgttaatatctggtacgtcccaaggaagaaggatgtcttcagcaaaccagatgaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaaccgttaatatctggtacgtcccaaggaagaaggatgtcttcagcaaaccagatgaca 415
Query: 364 ttctgactgctgcagagagatacattgaagagaatggaactgaagcgttcgagaagctca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttctgactgctgcagagagatacattgaagagaatggaactgaagcgttcgagaagctca 475
Query: 424 ttcacaggg 432
|||||||||
Sbjct: 476 ttcacaggg 484
Score = 299 bits (151), Expect = 2e-81
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 11 ggcctgtggttagtcttgtttatcctctatatgcctcaattagggcaattgaaaccaagt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ggcctgtggttagtcttgtttatcctctatatgcctcaattagggcaattgaaaccaagt 145
Query: 71 ctcccattgatgatcagcaatggcttacttactgggtcctctattcaatgattacgctct 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctcccattgatgatcagcaatggcttacttactgggtcctctattcaatgattacgctct 205
Query: 131 ttgagctcacttttgctaaagttattgaatg 161
|||||||||||||||||||||||||||||||
Sbjct: 206 ttgagctcacttttgctaaagttattgaatg 236
>gi|268521102|gb|FM891821.1|FM891821 FM891821 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002210,
mRNA sequence
Length = 495
Score = 478 bits (241), Expect = e-135
Identities = 247/249 (99%)
Strand = Plus / Minus
Query: 184 ggataccaatctggtcatatgcaaagcttatcatgacatgctggttagtgatcccatact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggataccaatctggtcatatgcaaagcttatcatgacatgctggttagtgatcccatact 431
Query: 244 tcagtggcgctgcttatgtttatgagcactttgtgagacctctctttgttaacccaaaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 430 tcagtggcgctgcttatgtttatgagcactttgtgagacctctctttgttaaccccaaac 371
Query: 304 aaaccgttaatatctggtacgtcccaaggaagaaggatgtcttcagcaaaccagatgaca 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 caaccgttaatatctggtacgtcccaaggaagaaggatgtcttcagcaaaccagatgaca 311
Query: 364 ttctgactgctgcagagagatacattgaagagaatggaactgaagcgttcgagaagctca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttctgactgctgcagagagatacattgaagagaatggaactgaagcgttcgagaagctca 251
Query: 424 ttcacaggg 432
|||||||||
Sbjct: 250 ttcacaggg 242
>gi|268523003|gb|FM896446.1|FM896446 FM896446 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003664,
mRNA sequence
Length = 416
Score = 305 bits (154), Expect = 3e-83
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 279 agacctctctttgttaacccaaaacaaaccgttaatatctggtacgtcccaaggaagaag 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agacctctctttgttaacccaaaacaaaccgttaatatctggtacgtcccaaggaagaag 357
Query: 339 gatgtcttcagcaaaccagatgacattctgactgctgcagagagatacattgaagagaat 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gatgtcttcagcaaaccagatgacattctgactgctgcagagagatacattgaagagaat 297
Query: 399 ggaactgaagcgttcgagaagctcattcacaggg 432
||||||||||||||||||||||||||||||||||
Sbjct: 296 ggaactgaagcgttcgagaagctcattcacaggg 263
>gi|268524315|gb|FM894995.1|FM894995 FM894995 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001319,
mRNA sequence
Length = 500
Score = 299 bits (151), Expect = 2e-81
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 11 ggcctgtggttagtcttgtttatcctctatatgcctcaattagggcaattgaaaccaagt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggcctgtggttagtcttgtttatcctctatatgcctcaattagggcaattgaaaccaagt 267
Query: 71 ctcccattgatgatcagcaatggcttacttactgggtcctctattcaatgattacgctct 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctcccattgatgatcagcaatggcttacttactgggtcctctattcaatgattacgctct 327
Query: 131 ttgagctcacttttgctaaagttattgaatg 161
|||||||||||||||||||||||||||||||
Sbjct: 328 ttgagctcacttttgctaaagttattgaatg 358
Score = 283 bits (143), Expect = 9e-77
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 184 ggataccaatctggtcatatgcaaagcttatcatgacatgctggttagtgatcccatact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggataccaatctggtcatatgcaaagcttatcatgacatgctggttagtgatcccatact 417
Query: 244 tcagtggcgctgcttatgtttatgagcactttgtgagacctctctttgttaacccaaaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcagtggcgctgcttatgtttatgagcactttgtgagacctctctttgttaacccaaaac 477
Query: 304 aaaccgttaatatctggtacgtc 326
|||||||||||||||||||||||
Sbjct: 478 aaaccgttaatatctggtacgtc 500