Jatropha Genome Database
- JcCA0029841.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0029841.30 + phase: 0 /partial
(1084 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268518657|gb|FM888900.1|FM888900 FM888900 Jatropha curcas emb... 902 0.0
gi|237680796|gb|GO247008.1|GO247008 JcrME_RL0552 Expressed seque... 129 7e-30
gi|237680323|gb|GO246535.1|GO246535 JcrME_RL0079 Expressed seque... 92 2e-18
gi|268524677|gb|FM895375.1|FM895375 FM895375 Jatropha curcas emb... 92 2e-18
gi|237680581|gb|GO246793.1|GO246793 JcrME_RL0337 Expressed seque... 82 2e-15
gi|237680932|gb|GO247123.1|GO247123 JcrME_RL0667 Expressed seque... 74 4e-13
>gi|268518657|gb|FM888900.1|FM888900 FM888900 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002417,
mRNA sequence
Length = 470
Score = 902 bits (455), Expect = 0.0
Identities = 469/471 (99%), Gaps = 2/471 (0%)
Strand = Plus / Plus
Query: 571 caggatgcccaaagtgcaataaatgacttaacaggtaagtggcttgggagcagacaga-t 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 caggatgcccaaagtgcaataaatgacttaacaggtaagtggcttgggagcagacagagt 60
Query: 630 tcgttgtaattgggccacaaaaggcgctggttccaatgatgacaaacaaagctctgattc 689
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 tcgttgtaattgggccacaaaaggcgctggt-ccaatgatgacaaacaaagctctgattc 119
Query: 690 aaaaagtgtggtggaactaacaaatggcacatcagaagagggcaaagacacggccactaa 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aaaaagtgtggtggaactaacaaatggcacatcagaagagggcaaagacacggccactaa 179
Query: 750 tgaggctcctgaaaacaatcctcagtatacaactgtttatgtgggaaatcttgctccaga 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tgaggctcctgaaaacaatcctcagtatacaactgtttatgtgggaaatcttgctccaga 239
Query: 810 ggttacgcagcttgatctccatcgccacttccatgctcttggtgctggagttattgagga 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggttacgcagcttgatctccatcgccacttccatgctcttggtgctggagttattgagga 299
Query: 870 ggtccgggttcagcgggataaaggatttggtttcgtgagatacagtactcatgctgaggc 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggtccgggttcagcgggataaaggatttggtttcgtgagatacagtactcatgctgaggc 359
Query: 930 tgctctagcaattcagatgggaaatacccagtcaattctttgtggcaaacaaataaagtg 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgctctagcaattcagatgggaaatacccagtcaattctttgtggcaaacaaataaagtg 419
Query: 990 ctcttggggtagcaagcccactccaccagggacgagttcaaatccgcttcc 1040
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctcttggggtagcaagcccactccaccagggacgagttcaaatccgcttcc 470
>gi|237680796|gb|GO247008.1|GO247008 JcrME_RL0552 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 568
Score = 129 bits (65), Expect = 7e-30
Identities = 254/317 (80%)
Strand = Plus / Plus
Query: 121 agtggaaatctgcctcctggttttgatccaagcacttgccgcagtgtgtatgttggaaat 180
|||||||||||||||||||| |||||| ||||| | |||||| |||||||||| |||||
Sbjct: 156 agtggaaatctgcctcctggctttgattcaagctcatgccgcggtgtgtatgtgggaaac 215
Query: 181 atccatacacaggtgactgaacctcttcttcaagaagttttttcaagtactggtcttgtt 240
||||| | ||||| || || || ||||||||||| ||||| |||| | |||| ||
Sbjct: 216 atccaccctcaggttacggagccccttcttcaagaggttttctcaaatgctggagccctt 275
Query: 241 gagggctgtaaacttattagaaaggaaaagtcgtcctatggatttattcactactatgat 300
|| || || || || ||||| || || ||||| |||||||| ||| | | |||| ||||
Sbjct: 276 gaaggatgcaagctgattaggaaagagaagtcatcctatggttttgtggattactttgat 335
Query: 301 cgtagatcagctgctcttgctatattatctcttaatggaaggcatctatttgggcagcca 360
|| | ||||| ||| |||| || | | ||||||||||||||||| ||||| |||||
Sbjct: 336 cgccgttcagcagctattgcgatcgtgacccttaatggaaggcatctgtttggacagcct 395
Query: 361 atcaaagttaattgggcatatgctagtggtcagcgagaagatacatcaggtcacttcaac 420
|| ||||| |||||||| ||||| ||| |||| |||| |||||||||||||| |||||
Sbjct: 396 attaaagtcaattgggcttatgccagtagtcaaagagaggatacatcaggtcatttcaat 455
Query: 421 atttttgttggagatct 437
||||||||||| |||||
Sbjct: 456 atttttgttggtgatct 472
>gi|237680323|gb|GO246535.1|GO246535 JcrME_RL0079 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 599
Score = 91.7 bits (46), Expect = 2e-18
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 121 agtggaaatctgcctcctggttttgatccaagcacttgccgcagtgtgtatgttggaaat 180
|||||||||||||||||||| |||||| ||||| | ||||||||||||||||| |||||
Sbjct: 193 agtggaaatctgcctcctggctttgattcaagctcatgccgcagtgtgtatgtgggaaac 252
Query: 181 atccatacacaggtgactgaacctcttcttcaagaagttttttcaa 226
||||| | ||||| || || || ||||||||||| ||||| ||||
Sbjct: 253 atccaccctcaggttacggagccccttcttcaagaggttttctcaa 298
>gi|268524677|gb|FM895375.1|FM895375 FM895375 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002183,
mRNA sequence
Length = 538
Score = 91.7 bits (46), Expect = 2e-18
Identities = 156/190 (82%), Gaps = 2/190 (1%)
Strand = Plus / Plus
Query: 766 aatcctcagtatacaactgtttatgtgggaaatcttgctccagaggttacg-cagcttga 824
|||||||||||||| ||||||||||| || || |||||||| ||||||| | || ||
Sbjct: 32 aatcctcagtataccactgtttatgttggcaaccttgctcccgaggttagttctgca-ga 90
Query: 825 tctccatcgccacttccatgctcttggtgctggagttattgaggaggtccgggttcagcg 884
||| |||| || |||||||| ||||||| ||| |||||| || || ||||| || ||
Sbjct: 91 tcttcatcagcatttccatgcacttggtgtaggaactattgaagatgtgcgggtgcaacg 150
Query: 885 ggataaaggatttggtttcgtgagatacagtactcatgctgaggctgctctagcaattca 944
|||||||| |||||||| |||||||||||||| ||| |||| || ||||| || |||||
Sbjct: 151 agataaaggttttggttttgtgagatacagtacacatactgaagcagctcttgctattca 210
Query: 945 gatgggaaat 954
||||||||||
Sbjct: 211 gatgggaaat 220
>gi|237680581|gb|GO246793.1|GO246793 JcrME_RL0337 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 424
Score = 81.8 bits (41), Expect = 2e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 121 agtggaaatctgcctcctggttttgatccaagcacttgccgcagtgtgtatgttggaaat 180
|||||||||||||||||||| |||||| ||||| | ||||||||||||||||| |||||
Sbjct: 188 agtggaaatctgcctcctggctttgattcaagctcatgccgcagtgtgtatgtgggaaac 247
Query: 181 atcca 185
|||||
Sbjct: 248 atcca 252
>gi|237680932|gb|GO247123.1|GO247123 JcrME_RL0667 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 634
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 886 gataaaggatttggtttcgtgagatacagtactcatgctgaggctgctctagcaattcag 945
|||||||| |||||||| |||||||||||||| ||| |||| || ||||| || ||||||
Sbjct: 589 gataaaggttttggttttgtgagatacagtacacatactgaagcagctcttgctattcag 530
Query: 946 atgggaaat 954
|||||||||
Sbjct: 529 atgggaaat 521