Jatropha Genome Database

JcCA0029531.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0029531.10 + phase: 0 /partial
         (1452 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517550|gb|FM889261.1|FM889261 FM889261 Jatropha curcas emb...    92   2e-18

>gi|268517550|gb|FM889261.1|FM889261 FM889261 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002876,
           mRNA sequence
          Length = 516

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 229/290 (78%)
 Strand = Plus / Plus

                                                                       
Query: 541 atgccagctagctttaaagttcttcatgatcctattagaaaaacagatactcttattgca 600
           ||||| ||||| |||||||| || ||||||||  | ||||| |  || ||| | || |||
Sbjct: 208 atgcctgctagttttaaagtactccatgatccagtgagaaacaatgagactttgatggca 267

                                                                       
Query: 601 gactttggtgagagtgccattggaagagtggctcctgttgactctggtttctggtggatc 660
           || || || |||||||| ||||||||||| || |||||||||||||| || |||||||| 
Sbjct: 268 gatttcggagagagtgcaattggaagagttgcccctgttgactctggattttggtggatt 327

                                                                       
Query: 661 attctgcttcgtgcttacaccaaatctacaggggatttatctctagcggagactccagag 720
           ||  |||| || || ||||| || ||||| || ||| | ||  |||| ||    ||||| 
Sbjct: 328 atattgctccgagcatacactaagtctacgggcgatatctcattagctgaattgccagaa 387

                                                                       
Query: 721 tgtcaaaagggaatgaggcttatattgactttgtgcttgtcggagggatttgatacattc 780
           ||||| ||||| ||| | || || |||| ||| ||| | || ||||| ||||| ||||||
Sbjct: 388 tgtcagaagggtatgcgcctaattttgagtttatgcctttcagagggctttgacacattc 447

                                                             
Query: 781 ccgactcttctttgtgctgatggttgctctatgattgatcgcagaatggg 830
           || |||||||||||||||||||| ||||  ||||||||||| || |||||
Sbjct: 448 ccaactcttctttgtgctgatggatgctgcatgattgatcgtaggatggg 497