Jatropha Genome Database

JcCA0028741.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0028741.30 + phase: 0 
         (1074 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518453|gb|FM888727.1|FM888727 FM888727 Jatropha curcas emb...   139   7e-33

>gi|268518453|gb|FM888727.1|FM888727 FM888727 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002190,
           mRNA sequence
          Length = 470

 Score =  139 bits (70), Expect = 7e-33
 Identities = 95/103 (92%), Gaps = 4/103 (3%)
 Strand = Plus / Plus

                                                                       
Query: 190 caggattttacagagtatacaaacctggacaagtgcatttcttatttgtgtgaatatatc 249
           ||||||||| ||||||||||||| |||||  ||||||||||||||||||||||||||   
Sbjct: 153 caggattttgcagagtatacaaatctggaagagtgcatttcttatttgtgtgaatat--- 209

                                                      
Query: 250 acaactaaaggtccttttgatggtttgctcggcttctctcagg 292
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 -caactaaaggtccttttgatggtttgctcggcttctctcagg 251



 Score =  101 bits (51), Expect = 2e-21
 Identities = 61/63 (96%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                       
Query: 126 tggaggcaaatccgacatagatggcatattcccaccaccctactttgagtggttccagta 185
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggaggcaaatccgacataaa-ggcatattcccaccaccctactttgagtggttccagta 59

              
Query: 186 caa 188
           |||
Sbjct: 60  caa 62