Jatropha Genome Database
- JcCA0028681.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0028681.10 - phase: 0 /partial
(1404 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680739|gb|GO246951.1|GO246951 JcrME_RL0495 Expressed seque... 894 0.0
gi|268519817|gb|FM888284.1|FM888284 FM888284 Jatropha curcas emb... 860 0.0
>gi|237680739|gb|GO246951.1|GO246951 JcrME_RL0495 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 671
Score = 894 bits (451), Expect = 0.0
Identities = 543/571 (95%), Gaps = 7/571 (1%)
Strand = Plus / Plus
Query: 1 atggcgaccttcatctccacaacgccaaaattatccgtctctcaaatcacttccagatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 atggcgaccttcatctccacaacgccaaaattatccgtctctcaaatcacttccagatct 117
Query: 61 tcaaannnnnnnnnnnnnnnnnnnnatttcacttctaaatggtctgatttccattcaaat 120
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 118 tcaaacctctctcctcctctcctccatttcacttctaaatggtctgatttccattcaaat 177
Query: 121 acctcattttcctttccatcctctaagtccctcctcagaaccaccatttcctgctcccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 acctcattttcctttccatcctctaagtccctcctcagaaccaccatttcctgctcccaa 237
Query: 181 tcatcctccgccgtaccatctccctctcccgccgcccctcgccgccgccgtccagagtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tcatcctccgccgtaccatctccctctcccgccgcccctcgccgccgccgtccagagtac 297
Query: 241 atacctaaccacatcccagaccctttctatgttcgtgtctttgatactactctccgcgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atacctaaccacatcccagaccctttctatgttcgtgtctttgatactactctccgcgat 357
Query: 301 ggcgaacagtctcccggcgccactctcacctccaaggaaaagcttgacatcgctcgccat 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 358 ggcgaacagtctcccggcgccactctcacctcccaggaaaagcttgacatcgctcgccat 417
Query: 361 ctttcgaagctcggcgtcgacataatagaagctggatttcctgcggcatctaatgatgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctttcgaagctcggcgtcgacataatagaagctggatttcctgcggcatctaatgatgat 477
Query: 421 tttgaggctgtgaaaaccattgctaaagaagtgggtaatgcggtggatgatgagggatac 480
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 478 tttgaggctgtgaaaaccattgctaaagaagtgggt-atgc-gtggatgatgagggatac 535
Query: 481 gtaccggttatttgtggattgtcgaggtgcaatgagaaggacatcaaaactgcctgggag 540
||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 536 gtaccggttatttgtggattgtcga-gtgc-atgagaaggacatc-aaactgcctgggag 592
Query: 541 gctgtgaagtatgccaagaggccgaggattc 571
||||||||||||| ||||||| |||||||||
Sbjct: 593 gctgtgaagtatg-caagagg-cgaggattc 621
>gi|268519817|gb|FM888284.1|FM888284 FM888284 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001667,
mRNA sequence
Length = 447
Score = 860 bits (434), Expect = 0.0
Identities = 437/438 (99%)
Strand = Plus / Plus
Query: 683 gtgatgacgtcgaatttagccctgaagatgctggcagatctgacagagagttcttgtacc 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gtgatgacgtcgaatttagccctgaagatgctggcagatctgacagagagttcttgtacc 69
Query: 743 atattttgggtgaagttatcaaggccggtgctacaactcttaacattcctgatactgttg 802
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 atattttgggtgaagtaatcaaggccggtgctacaactcttaacattcctgatactgttg 129
Query: 803 gtataacgctgcctagtgaatttggacagttgattgctgatataagagctaatacgcctg 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gtataacgctgcctagtgaatttggacagttgattgctgatataagagctaatacgcctg 189
Query: 863 gaattgaaaatgtcattatttcaacacactgccaaaatgatcttggactttctacggcta 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaattgaaaatgtcattatttcaacacactgccaaaatgatcttggactttctacggcta 249
Query: 923 acaccttagcagggacatatgcaggtgccagacaagtggaagtaacagtcaatggaattg 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 acaccttagcagggacatatgcaggtgccagacaagtggaagtaacagtcaatggaattg 309
Query: 983 gtgaaagagctggtaatgcttcattggaggaggttgtaatggctataaaatgtcgtggag 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtgaaagagctggtaatgcttcattggaggaggttgtaatggctataaaatgtcgtggag 369
Query: 1043 agcatgttttaggaggtctttatactggaattaattctaaacacatcactatggcaagca 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agcatgttttaggaggtctttatactggaattaattctaaacacatcactatggcaagca 429
Query: 1103 agatggtggaagaatata 1120
||||||||||||||||||
Sbjct: 430 agatggtggaagaatata 447